Automation Engineer Jobs in San Francisco, CA
Automation Engineer jobs in San Francisco are in strong demand, concentrated in SoMa, Mission Bay, and the Financial District across advanced manufacturing, life sciences, robotics, and enterprise software. Employers hiring right now include CRUSOE, HUD, and Kira. Scan the live roles below and apply to whichever ones fit.
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Sr Automation Engineer (Onsite in South San Francisco, CA)
Summary
We are looking for a talented laboratory automation engineer to join the Automation team. In this role, you will deploy automated solutions to the back-end of Twist operations, where synthesized DNA is converted into finalized products. With a specialization in the Hamilton STAR, you will develop, validate, and maintain automated liquid handling methods. Beyond providing hands-on support to Twist's diverse fleet of liquid handlers, you will also work with bulk dispensers, analytical instrumentation, integrated automation systems, and custom robotics. Reporting within the Engineering organization, you will collaborate closely with Operations, R&D, and Quality to release robust, automated workflows in a fast-paced environment.
What You'll Be Doing
- Develop, validate, and maintain automated liquid handling methods supporting high-throughput workflows across Twist's synthetic biology and genomics product lines
- Provide hands-on support for liquid handlers, bulk dispensers, analytical instrumentation, sequencers, and integrated automation systems
- Lead validation projects, author technical documentation, and maintain existing production systems.
- Collaborate within cross-functional teams to optimize existing processes, gather requirements for new processes, and integrate hardware with Twist LIMS
- Evaluate instrument manufacturers' native software and automation offerings, communicate integration needs, and build in-house solutions when needed
- Ensure work complies with regulatory and ISO 13485 quality standards
What You'll Bring to the Team
- B.S. or M.S. in Engineering, Life Sciences, or a related field with 7+ years of relevant industry experience in laboratory automation
- 5+ years hands-on experience operating and programming robotic liquid handlers, with demonstrated expertise in Hamilton Robotics
- Proven track record of successfully translating manual assays from bench to stand alone workstations or fully integrated platforms
- Hands-on experience with sample tracking software, writing software requirements, and developing interfaces with LIMS
- Strong scientific computation, data analysis, and problem-solving skills
Preferred Qualifications
- Proficiency in scripting and programming languages (e.g., Python, C#, VBScript) for custom data handling or workflow extension.
- Prior experience with Next-Generation Sequencing (NGS) assay automation.
- Experience working within ISO 13485 or other quality management systems.
About Twist Bioscience
Twist Bioscience synthesizes genes from scratch, known as "writing" DNA. Just as children learn to both read and write, the next phase of development for the genomics revolution is the ability to write DNA.
At Twist Bioscience, we work in service of people who are changing the world for the better. In fields such as health care, agriculture, industrial chemicals and data storage, our unique silicon-based DNA Synthesis Platform provides precision at a scale that is otherwise unavailable to our customers.
Twist Bioscience Corporation is an Equal Opportunity Employer. Twist Bioscience Corporation provides equal employment opportunities to all employees and applicants for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, age, disability, genetic characteristics, or any other category protected by law.
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Find Automation Engineer JobsAutomation Engineer Job Market in San Francisco
Who's Hiring
- CRUSOE44

- HUD15
- Kira15

- a16z15
- Mach915

Top Industries Hiring
- Technology & Software74
- Artificial Intelligence15
- Investment & Asset Management15
Automation Engineer Jobs in San Francisco: Frequently Asked Questions
How do I get a automation engineer job in San Francisco?
Target the sectors that hire most heavily in San Francisco: life sciences and biotech in Mission Bay, semiconductor and hardware firms in SoMa, and enterprise software companies in the Financial District. Candidates with hands-on PLC, SCADA, or robotics experience stand out, and familiarity with GMP environments is a real edge for the city's large medtech and biopharma employer base.
Which companies hire automation engineers in San Francisco?
San Francisco automation engineer roles are posted by CRUSOE, HUD, and Kira and others right now, based on current listings on Migrate Mate as of September 2026. The city's hiring mix includes large biotech and medtech firms in Mission Bay alongside hardware startups and industrial robotics companies in SoMa.
Are there remote automation engineer jobs in San Francisco?
Yes, though it depends heavily on the role. Automation engineering work that involves physical equipment, lab systems, or manufacturing lines is almost always on-site. About 36% of automation engineer openings tied to San Francisco are remote or hybrid as of September 2026, and those tend to be software-side roles focused on test automation, CI/CD pipelines, or controls software development.
How can I get a automation engineer job in San Francisco with little or no experience?
The most realistic entry path in San Francisco is through a manufacturing or lab technician role at one of Mission Bay's biotech or medtech companies, where employers regularly promote into automation roles once you understand the equipment and processes. Contract and temp-to-hire positions at hardware startups in SoMa are another practical door in, and candidates who can show project work with Python scripting, PLCs, or test frameworks move up the shortlist quickly.
Which industries hire the most automation engineers in San Francisco?
Most automation engineer openings in San Francisco sit in Technology & Software, Artificial Intelligence, and Investment & Asset Management, per current listings on Migrate Mate as of September 2026. San Francisco's concentration of biotech campuses in Mission Bay and a dense cluster of robotics and hardware startups in SoMa are the main drivers behind those industry totals.
Related Jobs in California
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