Principal Scientist Jobs in San Francisco, CA
Principal Scientist jobs in San Francisco are concentrated in Mission Bay, SoMa, and the Dogpatch biotech corridor, with strong demand across biopharma, diagnostics, and AI-driven drug discovery. Employers hiring right now include Genentech, Altos Labs, and Merck. See the openings below and apply to the ones that match your experience.
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INTRODUCTION
We are seeking a highly motivated and innovative Associate Principal Scientist to join our Discovery Oncology team in South San Francisco. The successful candidate will have a strong track record in oncology and drug discovery and will lead the conception, design, and execution of discovery-stage research programs. In this role, you will partner closely with cross-functional teams across the organization to advance differentiated cancer therapies from target validation through early development.
Key Responsibilities:
- Design, establish, and optimize in vitro and ex vivo assays to elucidate mechanisms of action and assess therapeutic potential.
- Make timely, data-driven decisions that balance innovation, risk, and experimental rigor.
- Communicate scientific strategy, rationale, and results clearly to internal teams and help build external scientific presence through publications, conference presentations, and collaboration.
- Drive ideation and early-stage discovery efforts to deliver competitive oncology programs, leveraging internal expertise and emerging technologies.
QUALIFICATIONS:
Education:
- Ph.D. in Cancer Biology, Cell Biology, Pharmacology, Immunology, Biochemistry, or a related discipline with four (4) or more years of relevant oncology drug discovery experience.
Required Experience and Skills:
- Deep expertise in tumor biology and immune oncology, including cancer genomics and oncogenic signaling.
- Broad technical expertise in molecular and cellular biology, biochemistry, and analytical methods.
- Extensive hands-on in vitro experience designing, executing, and analyzing multi-color flow cytometry and mechanistic cell-based assays (e.g., viability/cytotoxicity, cell cycle, signaling, and immune response readouts).
- Demonstrated ability to drive innovative research, evidenced by high-impact publications, patents, and/or successful advancement of discovery programs.
- Passionate, creative, and collaborative scientist committed to improving outcomes for people living with cancer.
- Excellent oral and written communication skills, a positive, team-oriented mindset, and strong leadership potential.
Preferred Experience and Skills:
- Hands-on experience with different therapeutic modalities (e.g., small molecules, mAbs, ADCs and TCEs).
- Extensive hands-on experience designing, executing, and analyzing in vivo mouse model data to evaluate therapeutics.
Required Skills:
Biochemistry, Cancer Cell Biology, Cancer Research, Cell Biology, Immuno-Oncology, In Vitro Biology, In Vitro Research, In Vitro Studies, Molecular Biology, Oncology, Tumor Biology.
US and Puerto Rico Residents Only:
Our company is committed to inclusion, ensuring that candidates can engage in a hiring process that exhibits their true capabilities. Please click here if you need an accommodation during the application or hiring process.
As an Equal Employment Opportunity Employer, we provide equal opportunities to all employees and applicants for employment and prohibit discrimination on the basis of race, color, age, religion, sex, sexual orientation, gender identity, national origin, protected veteran status, disability status, or other applicable legally protected characteristics. As a federal contractor, we comply with all affirmative action requirements for protected veterans and individuals with disabilities. For more information about personal rights under the U.S. Equal Opportunity Employment laws, visit:
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We are proud to be a company that embraces the value of bringing together talented and committed people with diverse experiences, perspectives, skills, and backgrounds. The fastest way to breakthrough innovation is when people with diverse ideas, broad experiences, backgrounds, and skills come together in an inclusive environment. We encourage our colleagues to respectfully challenge one another’s thinking and approach problems collectively.
Learn more about your rights, including under California, Colorado and other US State Acts.
COMPENSATION
- Salary Range: $159,600.00 - $251,200.00
This is the lowest to highest salary we in good faith believe we would pay for this role at the time of this posting. An employee’s position within the salary range will be based on several factors including, but not limited to relevant education, qualifications, certifications, experience, skills, geographic location, government requirements, and business or organizational needs.
The successful candidate will be eligible for annual bonus and long-term incentive, if applicable.
We offer a comprehensive package of benefits. Available benefits include medical, dental, vision healthcare and other insurance benefits (for employee and family), retirement benefits, including 401(k), paid holidays, vacation, and compassionate and sick days. More information about benefits is available at https://jobs.merck.com/us/en/compensation-and-benefits.
You can apply for this role through https://jobs.merck.com/us/en (or via the Workday Jobs Hub if you are a current employee). The application deadline for this position is stated on this posting.
San Francisco Residents Only: We will consider qualified applicants with arrest and conviction records for employment in compliance with the San Francisco Fair Chance Ordinance.
Los Angeles Residents Only: We will consider for employment all qualified applicants, including those with criminal histories, in a manner consistent with the requirements of applicable state and local laws, including the City of Los Angeles’ Fair Chance Initiative for Hiring Ordinance.
Employee Status:
Regular
Relocation:
Domestic/International
VISA Sponsorship:
Yes
Travel Requirements:
10%
Flexible Work Arrangements:
Not Applicable
Shift:
1st - Day
Valid Driving License:
No
Hazardous Material(s):
n/a
Job Posting End Date:
07/10/2026* A job posting is effective until 11:59:59PM on the day BEFORE the listed job posting end date. Please ensure you apply to a job posting no later than the day BEFORE the job posting end date.
Requisition ID: R399744
See All 98 Principal Scientist Jobs in San Francisco
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Find Principal Scientist JobsPrincipal Scientist Job Market in San Francisco
Who's Hiring
- Genentech20

- Altos Labs7

- Merck5

- Lyft4

- Plaid4

Top Industries Hiring
- Technology & Software40
- Medical Devices17
- Biotechnology & Pharmaceuticals15
- Science & Research7
- Fintech5
Principal Scientist Jobs in San Francisco: Frequently Asked Questions
How do I get a principal scientist job in San Francisco?
The strongest path is targeting San Francisco's dense biopharma and biotech ecosystem in Mission Bay and the Dogpatch, where companies regularly hire at the principal level for drug discovery, genomics, and translational research. Candidates who combine deep domain expertise with cross-functional experience leading project teams stand out most. A network built through UCSF events, QB3, or local industry meetups adds a real edge in this market.
Which companies hire principal scientists in San Francisco?
San Francisco principal scientist roles are posted by Genentech, Altos Labs, and Merck and others right now, based on current listings on Migrate Mate as of June 2026. The city draws a mix of large biopharma firms, clinical-stage biotechs, and well-funded startups, particularly those anchored near the UCSF Mission Bay campus.
Are there remote principal scientist jobs in San Francisco?
Yes, though it depends heavily on the role: computational, data science, and regulatory affairs-focused principal scientist positions tend to be remote-friendly, while lab-based or research-execution roles almost always require on-site presence. About 36% of principal scientist openings tied to San Francisco are remote or hybrid as of June 2026, with hybrid arrangements most common at mid-to-large biotech firms in Mission Bay.
How can I get a principal scientist job in San Francisco with little or no experience?
The most realistic entry path is through a postdoctoral fellowship at UCSF or a research associate role at one of San Francisco's early-stage biotechs, which frequently promote from within as programs advance. Companies in the QB3 incubator ecosystem and clinical-stage startups in the Dogpatch are more likely to consider candidates building toward the principal level. Demonstrating independence through publications, patents, or a defined research project significantly strengthens your position here.
Which industries hire the most principal scientists in San Francisco?
Most principal scientist openings in San Francisco sit in Technology & Software, Medical Devices, and Biotechnology & Pharmaceuticals, per current listings on Migrate Mate as of June 2026. San Francisco's proximity to UCSF and a dense cluster of venture-backed biotechs makes it one of the most active markets in the country for life sciences research talent at the principal level.
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