Senior Application Analyst Jobs in San Francisco, CA
Senior Application Analyst jobs in San Francisco, California are open across the metro, with employers like Rippling, OpenAI, and Airwallex hiring at every experience level. See the openings below and apply to the ones that match your experience.
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INTRODUCTION
The APeX Application Analyst functions as the primary support contact and expert for the application. They work under the direction of the Team Lead and/or Manager to configure, build & install the application. They coordinate all issues that arise during the project for their application area. Key operational activities include primary responsibility to analyze work flows and understand policies, procedures and constraints of the clinical or business operations supported by the application. In depth and precise investigation and documentation of operational specifications and application functionality is required. Key technical activities include the analysis of new releases to determine how workflow should be modified, building and populating databases and tables during initial system configuration, conducting system testing and conversion data validation. The application analyst develops and documents internal procedures and establishes change control processes for the application.
The APeX Application Analyst also develops user training aids and trains end users in workflow and use of the application. They function as the primary contact to troubleshoot problems and questions from end-users during training, go-live, stabilization and ongoing support (7x24). Successful candidates are skilled communicators who make decisions independently and in collaboration with others up and down the project structure. They are considered technical leaders with a high degree of knowledge in the overall field and recognized expertise in specific areas. Attention to detail is a critical skill for this position. Successful candidates enjoy helping other users to learn and adopt to use of the application.
In addition to general system support and maintenance, this position will be heavily involved in areas of medication billing including but not limited to processing medication receiving, billing error resolution, medication cost updates, 340b build maintenance, HCPC maintenance, and follow up to billing related inquiries. Past experience as a Willow Analyst in these areas or experience in hospital medication charging are preferred.
The APeX Application Analyst – Willow must be certified in one of the following APeX applications (or successfully receive certification within 6 months of hire):
- Willow
Department Overview
The Clinical Applications Team is responsible for designing, testing, and implementing the clinical aspects of UCSF’s Electronic Health Record. Includes interoperability with other third party systems and devices.
Our Core Values include:
Judgment: Makes wise decisions, root causes, thinks strategically, and prioritizes what to do now and what can be improved later.
Communication: Listens well, concise and articulate in speech and writing, treats people with respect independent of their status or disagreement with you & maintains calm poise in stressful situations.
Impact: Accomplish amazing amounts of important work, colleagues can rely upon you, focus on results, exhibit bias-to-action, and avoid analysis-paralysis.
Innovation: Find practical solutions to hard problems, suggest better approaches, new ideas that prove useful, stay nimble by minimizing complexity and finding time to simplify.
REQUIRED QUALIFICATIONS
- Bachelor's degree in health care information technology, computer science, or related area, and/or equivalent combination of experience/training.
- Three years of relevant work experience.
- Uncertified candidates must obtain Epic certification within 6 months of hire.
- Broad and/or in-depth knowledge of 1-2 areas of focus in clinical applications specialty area(s). Knowledge of systems and functions, including design, development, implementation, user support and training, maintenance, quality assurance, and system testing and evaluation.
- Strong problem-resolution skills, with the ability to quickly diagnose problems, and develop, test, and implement appropriate and effective solutions in a timely manner.
- Strong interpersonal skills, with the ability to effectively train, support, and work collaboratively with users of clinical information systems at all professional and technical levels.
- Detail-oriented, with proven organizational skills and the ability to effectively manage time, prioritize tasks, and see projects through to completion on deadline.
- Strong written and verbal communication skills, with the ability to convey technical information and instructions to all levels of clinical applications users in a specific, clear, and concise manner.
- Strong analytical skills and knowledge in documentation and reporting, with the ability to design and execute tests, analyze system performance data, and produce substantive reports and analyses.
- Ability to work with senior staff and managers, serving as a technical resource and providing advice and counsel on issues of functionality, efficiency, cost-effectiveness, policy, and performance.
PREFERRED QUALIFICATIONS
- Academic Medical Center experience with 3+ years of Epic experience.
- Experience in Willow medication billing build/support or in hospital medication charging functions.
- Epic Willow Application Certification.
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Who's Hiring
- Rippling19

- OpenAI13

- Airwallex8

- Anthropic8

- CLERA5C
Top Industries Hiring
- Technology & Software132
- Science & Research25
- Banking & Financial Services12
- Consulting & Professional Services11
- Fintech7
Senior Application Analyst Jobs in San Francisco: Frequently Asked Questions
How many senior application analyst jobs are there in San Francisco?
There are 247+ senior application analyst openings in San Francisco, California on Migrate Mate as of June 2026. New positions post regularly as San Francisco employers hire.
Which companies hire senior application analysts in San Francisco?
Employers hiring senior application analysts in San Francisco include Rippling, OpenAI, and Airwallex, based on current listings on Migrate Mate as of June 2026.
Are there remote senior application analyst jobs in San Francisco?
Yes. About 37% of senior application analyst openings tied to San Francisco are remote or hybrid as of June 2026. The rest are on-site roles based in and around San Francisco.
Which industries hire the most senior application analysts in San Francisco?
The sectors hiring the most senior application analysts in San Francisco are Technology & Software, Science & Research, and Banking & Financial Services, based on current listings on Migrate Mate as of June 2026.
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