AI Program Manager Jobs in San Francisco, CA
AI Program Manager jobs in San Francisco concentrate in SoMa, the Financial District, and Mission Bay across AI infrastructure, enterprise software, and healthtech, with demand running strong as companies accelerate AI product development. Employers hiring right now include Pinterest, Genentech, and DoorDash. Scan the live roles below and apply to whichever ones fit.
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Your Impact at LILA
Lila is building a platform where AI and automation co-evolve to solve the hardest problems in medicine. Within Life Science AI (LSAI), Lila develops large-scale generative models and reasoning frameworks — spanning biological sequences, molecular structures, and multimodal experimental data — that power automated scientific discovery and feed Lila's closed-loop "Lab-in-the-Loop" discovery engine. As that work scales, the surface area of cross-functional coordination across model research, evaluation, experimental science, and downstream integration is growing fast.
We are looking for a Senior or Principal Technical Program Manager to join our AI Research team and bring structure, accountability, and delivery cadence to Life Sciences AI. You will be the connective tissue between model researchers, computational and wet-lab scientists, automation and software teams, and the broader Lila organization. The successful candidate thrives in ambiguity, communicates exceptionally well across audiences, and knows how to build clarity and momentum on a fast-paced, rapidly scaling team. In addition, you must be genuinely curious about how foundation models for biology drive scientific discovery and able to clearly articulate what each program is trying to deliver.
What You'll Be Building
- Establish and operate the delivery cadence and rhythm for the Life Sciences AI organization — driving program planning, status, milestone tracking, and risk management across foundation model research, evaluation, and integration with Lila's closed-loop discovery engine.
- Serve as the key communication interface between LSAI and partner organizations (model training, experimental science, automation, software, product, and leadership); set up the organizational information flows that allow this communication to happen with speed at scale.
- Drive accountability across distributed, cross-functional teams without relying on direct authority; build consensus through clear communication and sound judgment.
- Translate research priorities into structured, accountable program execution: define workstreams, milestones, dependencies, and risks across biological sequence design, structure prediction, multimodal scientific reasoning, and other LSAI program areas.
- Partner with experimental scientists and computational biologists to keep the Lab-in-the-Loop feedback cycle on schedule — ensuring data generation, model training, and experimental validation stay synchronized.
- Implement best practices for rapid experimentation and iteration, enabling new LSAI workstreams to ramp efficiently as the team grows.
- Develop clear documentation and reporting to communicate vision, track progress, and align LSAI work with broader AI Research and company-wide priorities; represent program status and risks accurately even when the picture is uncertain or evolving.
What You'll Need to Succeed
- Bachelor's or Master's degree in Computer Science, Engineering, Life Sciences, or a related field.
- 8+ years of program or project management experience in technology, AI/ML, or life sciences environments.
- Proven experience leading cross-functional programs and driving them to successful completion under tight delivery timelines.
- Strong analytical and problem-solving skills, with the ability to turn technical and scientific requirements into actionable program roadmaps.
- Track record of driving accountability without direct authority across engineering, research, and scientific stakeholders.
- Exceptional written and verbal communication skills; track record of producing executive-quality documents, roadmaps, and updates that drive decisions.
Bonus Points For
- Direct experience in AI/ML research or product organizations, ideally in a program management or research operations capacity.
- Working familiarity with foundation models, generative AI, or ML for biology — sufficient to engage credibly with researchers and ask good questions.
- Exposure to experimental science workflows or closed-loop discovery systems where computational and wet-lab work iterate together.
- Experience managing programs that span research, evaluation, and integration workstreams in fast-moving technical environments.
- Enthusiastic about emerging technologies and experienced in driving rapid experimentation and program iteration.
About LILA
Lila Sciences is building Scientific Superintelligence™ to solve humankind's greatest challenges. We believe science is the most inspiring frontier for AI. Rather than hard-coding expert knowledge into tools, LILA builds systems that can learn for themselves.
LILA combines advanced AI models with proprietary AI Science Factory™ instruments into an operating system for science that executes the entire scientific method autonomously, accelerating discovery at unprecedented speed, scale, and impact across medicine, materials, and energy. Learn more at www.lila.ai.
Guided by our core values of truth, trust, curiosity, grit, and velocity, we move with startup speed while tackling problems of historic importance. If this sounds like an environment you'd love to work in, even if you don't meet every qualification listed above, we encourage you to apply.
We're All In
Lila Sciences is committed to equal employment opportunity regardless of race, color, ancestry, religion, sex, national origin, sexual orientation, age, citizenship, marital status, disability, gender identity or Veteran status.
Information you provide during your application process will be handled in accordance with our Candidate Privacy Policy.
A Note to Agencies
Lila Sciences does not accept unsolicited resumes from any source other than candidates. The submission of unsolicited resumes by recruitment or staffing agencies to Lila Sciences or its employees is strictly prohibited unless contacted directly by Lila Science's internal Talent Acquisition team. Any resume submitted by an agency in the absence of a signed agreement will automatically become the property of Lila Sciences, and Lila Sciences will not owe any referral or other fees with respect thereto.
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Who's Hiring
- Pinterest31

- Genentech9

- DoorDash8

- Scale AI6

Top Industries Hiring
- Technology & Software87
- Artificial Intelligence12
- Social Media9
- Medical Devices8
- Science & Research7
AI Program Manager Jobs in San Francisco: Frequently Asked Questions
How do I get a ai program manager job in San Francisco?
Target San Francisco's highest-density hiring sectors: AI infrastructure, enterprise SaaS, and fintech firms concentrated in SoMa and the Financial District, plus healthtech companies anchored around Mission Bay. Candidates who stand out here combine technical fluency in machine learning workflows with cross-functional program delivery experience. Familiarity with agile at scale and prior work on AI or data products gives a measurable edge over generalist program managers in this market.
Which companies hire ai program managers in San Francisco?
San Francisco ai program manager roles are posted by Pinterest, Genentech, and DoorDash and others right now, based on current listings on Migrate Mate as of June 2026. The city's employer mix skews heavily toward AI-native startups, large enterprise tech firms, and fintech companies that have embedded AI into core product lines.
Are there remote ai program manager jobs in San Francisco?
Yes, though many roles require at least some on-site presence given the collaborative, cross-functional nature of the work. About 47% of ai program manager openings tied to San Francisco are remote or hybrid as of June 2026, with fully remote arrangements most common for roles focused on planning, documentation, and stakeholder alignment rather than hands-on lab or hardware coordination.
How can I get a ai program manager job in San Francisco with little or no experience?
The most realistic entry path in San Francisco is transitioning from a technical coordinator, associate product manager, or data operations role at a local AI startup or enterprise tech company. Many SoMa and Mission Bay employers hire junior program coordinators who then move into AI-focused PM tracks internally. Building hands-on familiarity with tools like Jira, roadmap software, and basic ML pipeline concepts before applying strengthens any entry-level application here.
Which industries hire the most ai program managers in San Francisco?
San Francisco ai program manager roles concentrate in Technology & Software, Artificial Intelligence, and Social Media, based on current listings on Migrate Mate as of June 2026. San Francisco's density of AI-native companies, enterprise cloud platforms, and well-funded fintech firms makes it one of the most active hiring markets for this role in the country.
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