Bioinformatics Jobs in San Francisco, CA
Bioinformatics jobs in San Francisco are concentrated in Mission Bay, South of Market, and the Dogpatch, where biotechnology, pharmaceutical research, and genomics companies cluster around UCSF and the broader life sciences corridor. Employers actively hiring include LatchBio, Natera, and Eli Lilly. See the openings below and apply to the ones that match your experience.
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Showing 5 of 10+ Bioinformatics jobs
POSITION SUMMARY:
The Bioinformatics Production Analyst performs basic data analysis to provide bioinformatics support for Horizon Carrier Screening and future platform sequencing tests, while actively participating in production pipeline improvements. In this role, the analyst plays a pivotal part in ensuring Natera provides high-quality carrier screening and sequencing products.
PRIMARY RESPONSIBILITIES:
- Data Analysis & Processing: Analyze high-throughput DNA sequencing data and perform basic data analysis to support product development, validation studies, and incoming experiment analysis requests.
- Pipeline Improvement & Support: Help move data through the analysis pipeline while proactively identifying and implementing improvements to production workflows.
- Troubleshooting: Investigate and resolve technical issues related to data quality, analysis pipelines, and system integration.
- Cross-Functional Collaboration: Communicate effectively and work collaboratively with cross-functional teams, including biology, software engineering, lab operations, and medical/legal affairs.
- Documentation: Produce high-quality written documentation, including formal study plans and technical reports.
- Compliance & PHI Safety: Regularly handle Protected Health Information (PHI) in both paper and electronic formats, ensuring strict adherence to data privacy technologies and protocols.
- Training & Certification: Complete required HIPAA/PHI privacy, security, and General Policies and Procedures Compliance training within the first 30 days of hire, and maintain current status on all ongoing company training requirements.
QUALIFICATIONS:
Minimum Qualifications:
- Bachelor's degree in Biomedical Engineering, Computer Science, Bioinformatics, or a related equivalent field.
- 2+ years of relevant professional experience.
Preferred Qualifications:
- Master's degree in a relevant scientific or technical discipline.
- Previous professional experience within the biotechnology, diagnostics, or pharmaceutical industry.
KNOWLEDGE, SKILLS, AND ABILITIES:
- Experience using Python for data analysis and plotting preferred.
- Experience using Linux command-line tools and relational databases (SQL) preferred, knowledge of data visualization tools/platforms a plus (plotly).
- Knowledge of genomics, relevant NGS analyses (mapping, variant calling, etc.), and NGS file types is required. e.g. Know how to run pipelines and knowledge of pipeline platforms/languages (WDL, Nextflow).
- Ability to produce high quality written documentation for varying audiences, e.g. validation reports
- Familiarity with Large Language Models (LLMs), such as Claude Code, and how to leverage them to streamline workflows and tasks.
- Ability to work independently while managing multiple objectives and timelines.
- Desire to work in a fast-paced environment with potential for high impact in a small team.
- Team player, self-motivated, and detail-oriented.
OUR OPPORTUNITY
Natera™ is a global leader in cell-free DNA (cfDNA) testing, dedicated to oncology, women's health, and organ health. Our aim is to make personalized genetic testing and diagnostics part of the standard of care to protect health and enable earlier and more targeted interventions that lead to longer, healthier lives.
The Natera team consists of highly dedicated statisticians, geneticists, doctors, laboratory scientists, business professionals, software engineers and many other professionals from world-class institutions, who care deeply for our work and each other. When you join Natera, you'll work hard and grow quickly. Working alongside the elite of the industry, you'll be stretched and challenged, and take pride in being part of a company that is changing the landscape of genetic disease management.
WHAT WE OFFER
Competitive Benefits - Employee benefits include comprehensive medical, dental, vision, life and disability plans for eligible employees and their dependents. Additionally, Natera employees and their immediate families receive free testing in addition to fertility care benefits. Other benefits include pregnancy and baby bonding leave, 401k benefits, commuter benefits and much more. We also offer a generous employee referral program!
For more information, visit www.natera.com.
Natera is proud to be an Equal Opportunity Employer. We are committed to ensuring a diverse and inclusive workplace environment, and welcome people of different backgrounds, experiences, abilities and perspectives. Inclusive collaboration benefits our employees, our community and our patients, and is critical to our mission of changing the management of disease worldwide.
All qualified applicants are encouraged to apply, and will be considered without regard to race, color, religion, gender, gender identity or expression, sexual orientation, national origin, genetics, age, veteran status, disability or any other legally protected status. We also consider qualified applicants regardless of criminal histories, consistent with applicable laws.
If you are based in California, we encourage you to read this important information for California residents.
Link: https://www.natera.com/notice-of-data-collection-california-residents/
Please be advised that Natera will reach out to candidates with a @natera.com email domain ONLY. Email communications from all other domain names are not from Natera or its employees and are fraudulent. Natera does not request interviews via text messages and does not ask for personal information until a candidate has engaged with the company and has spoken to a recruiter and the hiring team. Natera takes cyber crimes seriously, and will collaborate with law enforcement authorities to prosecute any related cyber crimes.
- BBB announcement on job scams
- FBI Cyber Crime resource page
POSITION SUMMARY:
The Bioinformatics Production Analyst performs basic data analysis to provide bioinformatics support for Horizon Carrier Screening and future platform sequencing tests, while actively participating in production pipeline improvements. In this role, the analyst plays a pivotal part in ensuring Natera provides high-quality carrier screening and sequencing products.
PRIMARY RESPONSIBILITIES:
- Data Analysis & Processing: Analyze high-throughput DNA sequencing data and perform basic data analysis to support product development, validation studies, and incoming experiment analysis requests.
- Pipeline Improvement & Support: Help move data through the analysis pipeline while proactively identifying and implementing improvements to production workflows.
- Troubleshooting: Investigate and resolve technical issues related to data quality, analysis pipelines, and system integration.
- Cross-Functional Collaboration: Communicate effectively and work collaboratively with cross-functional teams, including biology, software engineering, lab operations, and medical/legal affairs.
- Documentation: Produce high-quality written documentation, including formal study plans and technical reports.
- Compliance & PHI Safety: Regularly handle Protected Health Information (PHI) in both paper and electronic formats, ensuring strict adherence to data privacy technologies and protocols.
- Training & Certification: Complete required HIPAA/PHI privacy, security, and General Policies and Procedures Compliance training within the first 30 days of hire, and maintain current status on all ongoing company training requirements.
QUALIFICATIONS:
Minimum Qualifications:
- Bachelor's degree in Biomedical Engineering, Computer Science, Bioinformatics, or a related equivalent field.
- 2+ years of relevant professional experience.
Preferred Qualifications:
- Master's degree in a relevant scientific or technical discipline.
- Previous professional experience within the biotechnology, diagnostics, or pharmaceutical industry.
KNOWLEDGE, SKILLS, AND ABILITIES:
- Experience using Python for data analysis and plotting preferred.
- Experience using Linux command-line tools and relational databases (SQL) preferred, knowledge of data visualization tools/platforms a plus (plotly).
- Knowledge of genomics, relevant NGS analyses (mapping, variant calling, etc.), and NGS file types is required. e.g. Know how to run pipelines and knowledge of pipeline platforms/languages (WDL, Nextflow).
- Ability to produce high quality written documentation for varying audiences, e.g. validation reports
- Familiarity with Large Language Models (LLMs), such as Claude Code, and how to leverage them to streamline workflows and tasks.
- Ability to work independently while managing multiple objectives and timelines.
- Desire to work in a fast-paced environment with potential for high impact in a small team.
- Team player, self-motivated, and detail-oriented.
OUR OPPORTUNITY
Natera™ is a global leader in cell-free DNA (cfDNA) testing, dedicated to oncology, women's health, and organ health. Our aim is to make personalized genetic testing and diagnostics part of the standard of care to protect health and enable earlier and more targeted interventions that lead to longer, healthier lives.
The Natera team consists of highly dedicated statisticians, geneticists, doctors, laboratory scientists, business professionals, software engineers and many other professionals from world-class institutions, who care deeply for our work and each other. When you join Natera, you'll work hard and grow quickly. Working alongside the elite of the industry, you'll be stretched and challenged, and take pride in being part of a company that is changing the landscape of genetic disease management.
WHAT WE OFFER
Competitive Benefits - Employee benefits include comprehensive medical, dental, vision, life and disability plans for eligible employees and their dependents. Additionally, Natera employees and their immediate families receive free testing in addition to fertility care benefits. Other benefits include pregnancy and baby bonding leave, 401k benefits, commuter benefits and much more. We also offer a generous employee referral program!
For more information, visit www.natera.com.
Natera is proud to be an Equal Opportunity Employer. We are committed to ensuring a diverse and inclusive workplace environment, and welcome people of different backgrounds, experiences, abilities and perspectives. Inclusive collaboration benefits our employees, our community and our patients, and is critical to our mission of changing the management of disease worldwide.
All qualified applicants are encouraged to apply, and will be considered without regard to race, color, religion, gender, gender identity or expression, sexual orientation, national origin, genetics, age, veteran status, disability or any other legally protected status. We also consider qualified applicants regardless of criminal histories, consistent with applicable laws.
If you are based in California, we encourage you to read this important information for California residents.
Link: https://www.natera.com/notice-of-data-collection-california-residents/
Please be advised that Natera will reach out to candidates with a @natera.com email domain ONLY. Email communications from all other domain names are not from Natera or its employees and are fraudulent. Natera does not request interviews via text messages and does not ask for personal information until a candidate has engaged with the company and has spoken to a recruiter and the hiring team. Natera takes cyber crimes seriously, and will collaborate with law enforcement authorities to prosecute any related cyber crimes.
- BBB announcement on job scams
- FBI Cyber Crime resource page
See All 10 Bioinformatics Jobs in San Francisco
Find roles in San Francisco that match your experience and apply in just a few clicks.
Find Bioinformatics JobsBioinformatics Job Market in San Francisco
Who's Hiring
- LatchBio4
- Natera1
- Eli Lilly1
- Genentech1
- Plasmidsaurus1
Top Industries Hiring
- Biotechnology & Pharmaceuticals6
- Science & Research2
- Medical Devices1
Bioinformatics Jobs in San Francisco: Frequently Asked Questions
How do I get a bioinformatics job in San Francisco?
Focus your search on Mission Bay and the Dogpatch, where biotech and genomics employers concentrate around UCSF's research campus and the adjacent life sciences hub. Candidates with experience in computational genomics, single-cell analysis, or clinical data pipelines stand out in this market. Engaging with UCSF postdoctoral networks and Bay Area bioinformatics meetups puts you directly in front of the hiring managers at the companies doing the most active recruiting.
Which companies hire bioinformaticss in San Francisco?
Companies currently hiring bioinformaticss in San Francisco include LatchBio, Natera, and Eli Lilly, per current listings on Migrate Mate as of June 2026. San Francisco's life sciences corridor draws a mix of early-stage genomics startups and established pharmaceutical and diagnostics firms, many with research operations anchored near UCSF's Mission Bay campus.
Are there remote bioinformatics jobs in San Francisco?
Yes, though roles requiring wet lab coordination or on-site instrument work remain largely in-person. About 11% of bioinformatics openings tied to San Francisco are remote or hybrid as of June 2026, with most flexible arrangements found in computational and data-focused positions. Pipeline development, variant annotation, and statistical analysis roles at San Francisco's larger genomics and software-driven biotech companies are the most likely to accommodate remote or hybrid schedules.
How can I get a bioinformatics job in San Francisco with little or no experience?
The most realistic entry path in San Francisco is through research associate or junior computational biology roles at UCSF-affiliated programs, biotech startups in Mission Bay, or contract research organizations that support early-phase clinical trials. A portfolio of public dataset analyses on GitHub and familiarity with Python or R pipelines gives candidates a concrete edge. Local employers also look favorably on applicants with UCSF extension coursework or participation in Bay Area open-source genomics projects.
Which industries hire the most bioinformaticss in San Francisco?
The sectors hiring the most bioinformaticss in San Francisco are Biotechnology & Pharmaceuticals, Science & Research, and Medical Devices, based on current listings on Migrate Mate as of June 2026. San Francisco's concentration of venture-backed genomics companies, UCSF research programs, and precision medicine startups in Mission Bay creates sustained demand that keeps these sectors consistently at the top of local hiring activity.
Related Jobs in California
See All 10 Bioinformatics Jobs in San Francisco
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