Lead Programmer Analyst Jobs
Lead Programmer Analyst jobs are open across financial services, healthcare, government, and technology, at every level from mid-level analyst to senior lead and principal, with specializations in systems analysis, enterprise application development, and software architecture. Scan the live roles below and apply to whichever ones fit.
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Senior Business Systems Analyst / Programmer – Rhapsody Integration Engine, .NET & Public Health Data Systems
Job Title: Business Systems Analyst / Programmer
Location: Idaho – Fully Remote
Work Arrangement: Remote
Employment Type: Temporary / Contract
Duration: November 30, 2026 – November 30, 2027
Position Overview
We are seeking an experienced Business Systems Analyst / Programmer to support, maintain, and modernize existing applications and data integration infrastructure.
The ideal candidate will have strong hands-on experience with the Rhapsody Integration Engine, Integrated Disease Surveillance Systems (IDSS), SQL development, and .NET technologies. This position will focus on maintaining public health data exchange workflows, troubleshooting existing applications, supporting system integrations, and contributing to the modernization of legacy systems.
The resource will work with internal teams and external partners to maintain reliable data exchange processes, improve system performance, and support public health surveillance infrastructure.
This role requires a combination of technical development, systems analysis, requirements gathering, troubleshooting, and process improvement experience.
Required Skills / Experience
Minimum 3 years of experience with Rhapsody Integration Engine, including interface development, message transformation, and troubleshooting.
Minimum 3 years of SQL development and troubleshooting experience.
Minimum 3 years of requirements analysis, including interpreting user needs and translating them into functional specifications.
Minimum 3 years of critical thinking and complex problem-solving experience.
Minimum 2 years of process optimization experience, identifying inefficiencies and recommending improvements to workflows or systems.
Proficiency in C# and .NET Framework.
Experience supporting .NET applications and Windows-based infrastructure.
Experience with Windows OS troubleshooting and technical support.
Experience developing and maintaining PowerShell scripts for automation and maintenance.
Ability to support public health data exchange systems and workflows.
Ability to participate in technical planning, architectural discussions, and system modernization initiatives.
Preferred Skills / Experience
2 years of experience with eCR (Electronic Case Reporting).
2 years of experience with ELR (Electronic Laboratory Reporting).
2 years of experience with Azure DevOps.
2 years of experience with HL7 or FHIR standards.
1 year of experience with IIS configuration and management.
1 year of experience with Windows Server administration.
Knowledge of NBS/NEDSS systems and workflows.
Experience with Oracle PL/SQL.
Familiarity with TFS (Team Foundation Server).
Experience with SMTP and SFTP protocols.
Understanding of public health messaging vocabularies and clinical coding systems, including LOINC, SNOMED, and ICD-10-CM.
Job Responsibilities
Application Development and Infrastructure Support
Support and troubleshoot existing .NET applications and Windows-based infrastructure.
Develop, maintain, and troubleshoot scripts and tools using PowerShell and SQL.
Support Windows Server environments and IIS-related configurations.
Assist with application maintenance, upgrades, and technical improvements.
Public Health Data Exchange and Integration
Manage and optimize data exchange processes between external organizations, internal public health teams, and the CDC.
Configure, monitor, and troubleshoot interfaces using the Rhapsody Integration Engine.
Maintain and enhance HL7 message routing, transformations, and mappings.
Support and troubleshoot the NEDSS Base System (NBS).
Implement system upgrades and new functionality/modules, including pages.
Maintain supporting systems such as NBS Utilities and the ELR data store.
Coordinate with external partners, including the CDC, hospitals, and laboratories.
Support public health data exchange workflows and ensure reliable data movement between connected systems.
Systems Modernization and Technical Analysis
Assist with planning and providing strategic direction for modernization initiatives involving legacy systems and data integration.
Evaluate and recommend modern technologies and tools to improve disease surveillance and data infrastructure.
Collaborate with internal teams to assess existing architecture and recommend improvements.
Participate in daily and weekly planning and architectural discussions.
Analyze user requirements and translate business needs into functional specifications.
Identify workflow inefficiencies and recommend process improvements.
Documentation and Project Support
Prepare technical documentation and provide knowledge transfer to internal staff.
Support ongoing system maintenance and troubleshooting activities.
Track all project time using 7pace Timetracker.
Ideal Candidate
The ideal candidate is a technically strong Business Systems Analyst / Programmer with hands-on experience in Rhapsody Integration Engine and public health data integration environments.
They should understand how healthcare and public health organizations exchange information using integration engines and messaging standards. Experience with NBS/NEDSS, ELR, eCR, HL7, and FHIR will be particularly valuable.
The candidate should also have strong SQL and .NET development capabilities, experience troubleshooting Windows-based applications and infrastructure, and the ability to participate in technical modernization discussions.
A successful candidate will be analytical, proactive, comfortable working with internal and external stakeholders, and capable of maintaining critical data exchange systems while helping modernize legacy technology.
Senior Business Systems Analyst / Programmer – Rhapsody Integration Engine, .NET & Public Health Data Systems
Job Title: Business Systems Analyst / Programmer
Location: Idaho – Fully Remote
Work Arrangement: Remote
Employment Type: Temporary / Contract
Duration: November 30, 2026 – November 30, 2027
Position Overview
We are seeking an experienced Business Systems Analyst / Programmer to support, maintain, and modernize existing applications and data integration infrastructure.
The ideal candidate will have strong hands-on experience with the Rhapsody Integration Engine, Integrated Disease Surveillance Systems (IDSS), SQL development, and .NET technologies. This position will focus on maintaining public health data exchange workflows, troubleshooting existing applications, supporting system integrations, and contributing to the modernization of legacy systems.
The resource will work with internal teams and external partners to maintain reliable data exchange processes, improve system performance, and support public health surveillance infrastructure.
This role requires a combination of technical development, systems analysis, requirements gathering, troubleshooting, and process improvement experience.
Required Skills / Experience
Minimum 3 years of experience with Rhapsody Integration Engine, including interface development, message transformation, and troubleshooting.
Minimum 3 years of SQL development and troubleshooting experience.
Minimum 3 years of requirements analysis, including interpreting user needs and translating them into functional specifications.
Minimum 3 years of critical thinking and complex problem-solving experience.
Minimum 2 years of process optimization experience, identifying inefficiencies and recommending improvements to workflows or systems.
Proficiency in C# and .NET Framework.
Experience supporting .NET applications and Windows-based infrastructure.
Experience with Windows OS troubleshooting and technical support.
Experience developing and maintaining PowerShell scripts for automation and maintenance.
Ability to support public health data exchange systems and workflows.
Ability to participate in technical planning, architectural discussions, and system modernization initiatives.
Preferred Skills / Experience
2 years of experience with eCR (Electronic Case Reporting).
2 years of experience with ELR (Electronic Laboratory Reporting).
2 years of experience with Azure DevOps.
2 years of experience with HL7 or FHIR standards.
1 year of experience with IIS configuration and management.
1 year of experience with Windows Server administration.
Knowledge of NBS/NEDSS systems and workflows.
Experience with Oracle PL/SQL.
Familiarity with TFS (Team Foundation Server).
Experience with SMTP and SFTP protocols.
Understanding of public health messaging vocabularies and clinical coding systems, including LOINC, SNOMED, and ICD-10-CM.
Job Responsibilities
Application Development and Infrastructure Support
Support and troubleshoot existing .NET applications and Windows-based infrastructure.
Develop, maintain, and troubleshoot scripts and tools using PowerShell and SQL.
Support Windows Server environments and IIS-related configurations.
Assist with application maintenance, upgrades, and technical improvements.
Public Health Data Exchange and Integration
Manage and optimize data exchange processes between external organizations, internal public health teams, and the CDC.
Configure, monitor, and troubleshoot interfaces using the Rhapsody Integration Engine.
Maintain and enhance HL7 message routing, transformations, and mappings.
Support and troubleshoot the NEDSS Base System (NBS).
Implement system upgrades and new functionality/modules, including pages.
Maintain supporting systems such as NBS Utilities and the ELR data store.
Coordinate with external partners, including the CDC, hospitals, and laboratories.
Support public health data exchange workflows and ensure reliable data movement between connected systems.
Systems Modernization and Technical Analysis
Assist with planning and providing strategic direction for modernization initiatives involving legacy systems and data integration.
Evaluate and recommend modern technologies and tools to improve disease surveillance and data infrastructure.
Collaborate with internal teams to assess existing architecture and recommend improvements.
Participate in daily and weekly planning and architectural discussions.
Analyze user requirements and translate business needs into functional specifications.
Identify workflow inefficiencies and recommend process improvements.
Documentation and Project Support
Prepare technical documentation and provide knowledge transfer to internal staff.
Support ongoing system maintenance and troubleshooting activities.
Track all project time using 7pace Timetracker.
Ideal Candidate
The ideal candidate is a technically strong Business Systems Analyst / Programmer with hands-on experience in Rhapsody Integration Engine and public health data integration environments.
They should understand how healthcare and public health organizations exchange information using integration engines and messaging standards. Experience with NBS/NEDSS, ELR, eCR, HL7, and FHIR will be particularly valuable.
The candidate should also have strong SQL and .NET development capabilities, experience troubleshooting Windows-based applications and infrastructure, and the ability to participate in technical modernization discussions.
A successful candidate will be analytical, proactive, comfortable working with internal and external stakeholders, and capable of maintaining critical data exchange systems while helping modernize legacy technology.
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Find Lead Programmer Analyst JobsLead Programmer Analyst Job Market
Who's Hiring
- Citi10
- University of Alabama6
- Betis Group5B
- Dartmouth Health4
- XoriantːUS3X
Top Industries Hiring
- Technology & Software
- Healthcare & Medical Services
- Education
- Automotive
- Manufacturing
What Employers Look For
The qualifications that appear most often in lead programmer analyst jobs.
- Bachelor's degree in computer science, information systems, or a related field
- 5 or more years of progressive software development or systems analysis experience
- Proficiency in Java, Python, C#, or another enterprise programming language
- Experience with relational databases such as Oracle, SQL Server, or PostgreSQL
- Demonstrated ability to lead technical teams or mentor junior developers
- Familiarity with agile development methodologies and tools such as Jira or Azure DevOps
Tips for Your Lead Programmer Analyst Job Search
Tailor your resume to each stack
Lead programmer analyst postings vary widely by tech environment, so a resume that lists every language you've touched hurts more than it helps. Prioritize the specific languages, frameworks, and databases named in each job description and push those to the top of your skills section.
Show ownership, not just contribution
Hiring managers for lead roles want to see that you drove outcomes, not just participated in them. Rewrite your bullet points to name the system you owned, the team size you guided, and the measurable result, even if the metric is as simple as cutting deployment time.
Apply early to roles that fit
Migrate Mate lists lead programmer analyst openings from across the United States in one place, so you can find roles that match and apply directly to each listing.
Filter by environment before applying
Lead programmer analyst roles in government contracting require different credentials than those in private-sector fintech or healthcare IT. Before applying, confirm whether the role requires a security clearance, specific compliance knowledge like HIPAA or FedRAMP, or industry-domain experience you actually have.
Prepare a system design walkthrough
Most lead-level technical interviews include at least one architecture or system design question. Practice explaining a full solution you designed, covering data flow, component choices, trade-offs you weighed, and how you'd scale it, without relying on slides or diagrams as a crutch.
Negotiate scope, not just base pay
When you receive an offer, the title's formal scope matters as much as compensation. Clarify what decisions you'll own versus advise on, how many direct reports or mentorship responsibilities are expected, and whether the lead designation comes with a formal promotion path.
Lead Programmer Analyst Jobs: Frequently Asked Questions
Which companies are hiring the most lead programmer analysts?
The most active employers for lead programmer analysts right now are Citi, University of Alabama, and Betis Group, and the most openings are in Texas, New York, and California, based on current listings on Migrate Mate as of November 2026. Demand is especially concentrated in financial services, defense contracting, and large healthcare systems.
How many lead programmer analyst jobs are remote?
About 64% of lead programmer analyst openings are fully remote or hybrid as of November 2026, though the share varies by industry. Roles centered on enterprise application development and systems integration tend to offer the most remote flexibility, while positions tied to on-premises infrastructure or government facilities are more likely to require an in-person presence.
How do you become a lead programmer analyst?
Most lead programmer analysts start as junior developers or analysts, build several years of hands-on coding and systems work, then take on project ownership or informal mentorship responsibilities before moving into a formal lead role. Strengthening your ability to translate business requirements into technical designs, and volunteering to own modules or small teams, accelerates that progression meaningfully.
Can you get hired as a lead programmer analyst without much experience?
Getting hired directly into a lead programmer analyst role with little experience is uncommon because employers expect you to guide technical decisions and mentor others from day one. That said, candidates who have led a significant project end-to-end, contributed to open-source systems, or completed advanced coursework in software architecture can sometimes compete for junior-lead or associate-lead titles as a bridge into the full role.
What does the lead programmer analyst interview process look like?
Most lead programmer analyst interviews include an initial recruiter screen, a technical coding or systems design round, and a behavioral interview focused on how you've handled leading projects, resolving conflicts within a team, and communicating trade-offs to non-technical stakeholders. Some employers add a take-home design exercise or a panel interview with engineering managers and senior architects before extending an offer.
Where can I find and apply to lead programmer analyst jobs?
You can find and apply to lead programmer analyst jobs on Migrate Mate, which lists current openings from across the United States. Search for roles that match your stack, seniority level, and preferred industry, then apply directly to each listing that fits.
See All 188+ Lead Programmer Analyst Jobs
Find roles that match your experience and apply in just a few clicks.
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