Automation Engineer Jobs in Boston, MA
Automation engineer jobs in Boston are concentrated in the Seaport District, Kendall Square, and along the Route 128 corridor, with steady demand across life sciences, medical devices, advanced manufacturing, and robotics. Employers hiring right now include Boston University, PTC, and REEKON Tools. See the openings below and apply to the ones that match your experience.
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Beacon Biosignals is transforming precision medicine for the brain, from clinical development to clinical care. For Life Sciences partners, we offer the leading at-home EEG platform for clinical development of novel therapeutics for neurological, psychiatric, and sleep disorders. Our Diagnostics business is building the most comprehensive at-home platform for precision diagnostics, combining EEG and cardiopulmonary signals to deliver reimbursable assessments for sleep and central nervous system disorders. Together, we're changing the way patients are diagnosed and treated for any disorder that affects brain physiology.
- You regularly visit Beacon's fulfillment centers, channel partners, and customers to observe and map their workflows first-hand to inform FAST's roadmap.
- You lead design and architecture for FAST's automation and tooling, weigh implementation tradeoffs using engineering principles and data, and anticipate the long-term impact of those decisions so they translate into outcomes for Beacon, its partners, and customer sites.
- You ship Beacon Platform automation for the highest-impact opportunities you uncover, so that Beacon's forward and reverse fulfillment and logistics flows run reliably and efficiently.
- You know everything that goes into a successful, high quality release, from validation and documentation to training and communication, and you work to make adoption of new tools and workflows successful by building repeatable playbooks for onboarding and change management.
- You recognize that not all tools should be built from scratch. You weigh building against integrating with the systems warehouses, partners, and sites already use such as warehouse and logistics management systems, enabling them to continue using the tools they've already optimized for their workflows while expanding support for Beacon devices and services.
- You and your team have taken over intake and triage of fulfillment and device-return issues from the engineers who cover them manually today, with clear runbooks and a tracked backlog of every issue type.
- You plan and prioritize your own work and the team's work, collaborating with key stakeholders. You make reasoned tradeoffs between speed, generalizability and debt, based on the needs of multiple stakeholder teams, and you can explain how FAST's work affects other teams.
- You work across our partner engineering teams, debugging ambiguous problems across systems beyond your team's purview and turning recurring field issues into root-cause fixes.
- You leave the codebase better than you found it by improving structure, test coverage and development tooling.
- You coach and mentor other Beaconeers, give actionable feedback that drives improvement, recommend improvements to team practices, and help set timelines and methods for new assignments as team or tech lead.
- You measure what matters, such as the number of cases that still need an engineer and time to resolve, or the time it takes to onboard a new site or partner, and use it to decide what to build next.
- 5-8 years of professional software engineering experience, including building internal tools, workflow automation or system integrations.
- High proficiency in at least one technical area, with a record of writing correct, well-tested code that others can easily understand and maintain.
- Experience efficiently debugging and profiling ambiguous problems across systems and codebases, including data pipelines and device or upload workflows.
- Experience leading design and architecture for complex projects and systems, and backing up decisions with data.
- Experience working across teams and domains, and directly with non-engineering users or external partners, to understand their workflow and ship tools they can use on their own.
- Experience coaching and mentoring less experienced engineers, and leading or coordinating the work of others as a team or tech lead. Direct management experience is not required.
- Education: Bachelor's degree in computer science, engineering or a related field, or equivalent practical experience]
- Preferred: experience with logistics, warehouse or fulfillment systems, or with returns and reverse-logistics flows.
- Preferred: experience in a regulated environment, such as medical devices, where traceability and compliance matter.
- Traits and behaviors: curious, biased toward simple solutions, comfortable in a new team where the process is still being defined, a strong written communicator in an async environment, and empathetic to the people who rely on your tools.
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Who's Hiring


Top Industries Hiring
- Law & Legal Services
- Technology & Software
- Banking & Financial Services
Automation Engineer Jobs in Boston: Frequently Asked Questions
How do I get a automation engineer job in Boston?
Focus your search on the Seaport District, Kendall Square, and the Route 128 technology corridor, where life sciences, medical device manufacturers, and robotics firms cluster. Candidates with hands-on PLC programming, SCADA systems, or FDA-regulated manufacturing experience stand out in Boston's market. Networking through local robotics meetups and university research partnerships also opens doors that job boards alone won't.
Which companies hire automation engineers in Boston?
Companies currently hiring automation engineers in Boston include Boston University, PTC, and REEKON Tools, per current listings on Migrate Mate as of November 2026. Boston's mix of biotech giants, medical device makers, and advanced manufacturing firms means demand is distributed across both large multinationals and growth-stage startups in the greater metro area.
Are there remote automation engineer jobs in Boston?
Yes, though with limits: automation engineer roles that require hands-on equipment work, lab access, or factory-floor presence are rarely fully remote. About 83% of automation engineer openings tied to Boston are remote or hybrid as of November 2026, with hybrid arrangements most common for roles focused on controls software, validation documentation, or systems design rather than physical commissioning.
How can I get a automation engineer job in Boston with little or no experience?
The most realistic entry path in Boston is targeting co-op and associate-level roles at medical device and biotech companies, many of which maintain structured junior engineering pipelines. Contract-to-hire positions at automation integrators along the Route 128 corridor are another strong opening, as are equipment technician roles at local research hospitals that offer a path toward engineering responsibilities over time.
Which industries hire the most automation engineers in Boston?
Most automation engineer openings in Boston sit in Law & Legal Services, Technology & Software, and Banking & Financial Services, per current listings on Migrate Mate as of November 2026. Boston's dense concentration of FDA-regulated manufacturers, academic medical centers, and robotics research institutions drives consistent local demand for engineers who can design, validate, and maintain automated systems.
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