Principal Scientist Jobs in South San Francisco, CA
Principal Scientist jobs in South San Francisco, California are in active demand, with employers like Calico Life Sciences, Cellares, and Xaira Therapeutics among those hiring. Find a role that fits below and apply directly.
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About Allogene:
Allogene Therapeutics, with headquarters in South San Francisco, is a clinical-stage biotechnology company pioneering the development of allogeneic chimeric antigen receptor T cell (AlloCAR T) products for cancer and autoimmune disease. Led by a management team with significant experience in cell therapy, Allogene is developing a pipeline of “off-the-shelf” CAR T cell product candidates with the goal of delivering readily available cell therapy on-demand, more reliably, and at greater scale to more patients.
About the role:
Allogene Therapeutics is seeking a highly motivated individual for the role of Principal Scientist, Drug Product Process Science to join the Process and Product Development department. The successful candidate will play a critical role in drug product process characterization and BLA readiness for allogeneic CAR-T therapies, including but not limited to process characterization design and execution, and regulatory-ready documentation in support of BLA-enabling and BLA submission activities, and will work closely with cross-functional partners across MSAT, Quality, Regulatory, Analytical Sciences, and Clinical Operations.
Responsibilities include, but are not limited to:
- Design Drug Product process characterization strategies using Design of Experiment (DOE); Lead the design, execution, analysis and documentation of Drug Product process characterization studies to enable BLA submission.
- Establish and qualify representative scale down models (SDMs) in support of drug product process design and process characterization.
- Develop and execute in-use compatibility studies and collaborate with Clin Ops on the development, implementation, and management of DAI and IPM.
- Lead the development and continuous improvement of DP data organization, analysis and visual workflows to enable efficient protocol execution and support regulatory readiness.
- Provide DP technical leadership for large scale manufacturing runs, including “person-in-plant” support as needed.
- Ensure timely, complete, and inspection-ready documentation, including protocols, reports, ELN records, and regulatory content.
- Author and review BLA-enabling technical documents, including risk assessments, protocols, development reports, process descriptions, control strategy/validation/PPQ-supporting documentation, and Module 3 DP sections (IND and BLA).
- Contribute to the establishment of DP best practices and mentoring of future DP hires as the team scales.
Position Requirements & Qualifications:
- Ph.D. in Pharmaceutics, Immunology, biomedical engineering, or related discipline with at least 7 years of industry experience; or MS with at least 10 years of industry experience; or BS with at least 12 years of industry experience.
- Experience working in the pharmaceutical or biotechnology industry that includes elements of new product development, process characterization, formulation development, equipment design and implementation, technology transfers, statistical process control (SPC), and statistical design and analysis of experiments.
- Hands-on experience developing drug product processes using Quality-by-Design (QbD) principles for autologous and/or allogeneic cell therapies, preferably including late-stage or BLA-enabling programs.
- Experience designing and executing process characterization and/or PPQ-related studies for biological or cell therapy products.
- Prior contribution to regulatory submissions (e.g., IND, BLA) is highly preferred.
- Experience with electronic data systems and ELNs (e.g., Benchling or similar platforms) for experimental documentation, data analysis, and collaboration is preferred.
- Experience in pharmaceutical development is a plus.
- Demonstrated ability to operate effectively in high-intensity execution phases with overlapping protocols, data analysis, and reporting timelines.
- Strong background in immunology, cell biology, aseptic primary cell culture and cell-based assays.
- Proficiency in statistical software (e.g. JMP, or similar).
- Excellent organizational skills and an ability to prioritize effectively to deliver results within reasonably established timelines.
- Ability to work independently in a fast-paced startup environment as well as work collaboratively in a highly interactive team environment.
- Candidates must be authorized to work in the U.S.
We offer a chance to work with talented people in a collaborative environment and provide a top-notch compensation and benefits package, which includes an annual performance bonus, equity, health insurance, generous time off (including 2 annual holiday company-wide shutdowns) and much more. The expected salary range for this role is $155,000 - $180,000 per year. Actual pay will be determined based on experience, qualifications, geographic location, business needs, and other job-related factors permitted by law.
As an equal opportunity employer, Allogene is committed to a diverse workforce. Employment decisions regarding recruitment and selection will be made without discrimination based on race, color, religion, national origin, gender, age, sexual orientation, physical or mental disability, genetic information or characteristic, gender identity and expression, veteran status, or other non-job-related characteristics or other prohibited grounds specified in applicable federal, state and local laws. We also embrace differences in experience and background, and welcome diversity of opinions and thought, designed to create a stronger and better Allogene that is focused on developing life-changing products for patients.
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Find Principal Scientist JobsPrincipal Scientist Job Market in South San Francisco
Who's Hiring
- Calico Life Sciences10

- Cellares3

- Xaira Therapeutics3

- Denali Therapeutics3

- Allogene Therapeutics3

Top Industries Hiring
- Biotechnology & Pharmaceuticals23
- Healthcare & Medical Services10
- Science & Research7
- Construction & Real Estate3
Principal Scientist Jobs in South San Francisco: Frequently Asked Questions
How many principal scientist jobs are there in South San Francisco?
There are 35+ principal scientist openings in South San Francisco, California on Migrate Mate as of June 2026. New positions post regularly as South San Francisco employers hire.
Which companies hire principal scientists in South San Francisco?
South San Francisco principal scientist roles are posted by Calico Life Sciences, Cellares, and Xaira Therapeutics and others right now, based on current listings on Migrate Mate as of June 2026.
Are there remote principal scientist jobs in South San Francisco?
Yes. About 0% of principal scientist openings tied to South San Francisco are remote or hybrid as of June 2026. The rest are on-site roles based in and around South San Francisco.
Which industries hire the most principal scientists in South San Francisco?
Most principal scientist openings in South San Francisco sit in Biotechnology & Pharmaceuticals, Healthcare & Medical Services, and Science & Research, per current listings on Migrate Mate as of June 2026.
See All 35 Principal Scientist Jobs in South San Francisco
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