Lead Analyst Jobs in Cambridge, MA
Lead Analyst jobs in Cambridge, Massachusetts are in active demand, with employers like Lila Sciences, Flagship Pioneering, and Moderna among those hiring. Find a role that fits below and apply directly.
Find Lead Analyst JobsOverview
Showing 5 of 31+ Lead Analyst jobs











Job Summary: A leading biopharmaceutical organization is seeking a Bioinformatics Analyst III to support cutting-edge single-cell atlas initiatives focused on immunology research and target discovery. This role will analyze large-scale transcriptomic and epigenomic datasets, develop computational workflows, and collaborate with multidisciplinary teams to generate biological insights that advance therapeutic research. The ideal candidate will possess strong expertise in single-cell bioinformatics, Python programming, and computational biology.
Key Responsibilities:
- Curate, harmonize, and analyze large-scale single-cell transcriptomic and epigenomic datasets from internal and public sources.
- Integrate multi-modal datasets to support the development of comprehensive single-cell reference atlases.
- Develop and apply computational, statistical, and artificial intelligence or machine learning methods to identify cell states, regulatory networks, and disease-associated biological mechanisms.
- Analyze tissue-specific biology, fibroblast heterogeneity, and cellular interactions to support target identification and validation efforts.
- Collaborate with immunology researchers, computational scientists, and cross-functional teams to translate scientific questions into computational analyses.
- Design, implement, and optimize reproducible bioinformatics workflows for large-scale omics data analysis.
- Document data processing pipelines, analysis methods, and computational workflows to ensure reproducibility and transparency.
- Support time-sensitive research projects that contribute to therapeutic target discovery and prioritization.
- Present scientific findings and analytical results clearly to technical and non-technical stakeholders.
Required Qualifications:
- Master's degree with at least 5 years of experience, or Doctorate degree in Bioinformatics, Computational Biology, Computational Genetics, Computer Science, Biostatistics, Artificial Intelligence, Machine Learning, or a related quantitative discipline.
- Strong experience analyzing single-cell RNA sequencing and single-cell ATAC sequencing datasets.
- Experience building single-cell reference atlases and integrating multi-modal biological datasets.
- Advanced proficiency in Python and bioinformatics or data science workflows.
- Experience working with high-performance computing or cloud computing environments for large-scale omics data analysis.
- Strong understanding of cell type annotation, clustering, trajectory inference, and regulatory network analysis.
- Excellent analytical, documentation, problem-solving, and communication skills.
- Ability to independently design, execute, and troubleshoot computational pipelines.
Preferred Qualifications:
- Experience with NumPy, Pandas, Scikit-learn, Matplotlib, and Seaborn.
- Familiarity with TensorFlow or PyTorch.
- Experience using Git for version control and collaborative software development.
- Hands-on experience with Scanpy, Seurat, Bioconductor, or comparable single-cell analysis platforms.
- Experience with multi-modal technologies such as CITE-seq, spatial transcriptomics, or chromatin accessibility analysis.
- Knowledge of regulatory network inference, peak-to-gene linking, and systems immunology.
- Experience developing artificial intelligence or machine learning models integrating transcriptomic, proteomic, and imaging datasets.
Benefits: The Company offers the following benefits for this position, subject to applicable eligibility requirements: medical insurance, dental insurance, vision insurance, 401(k) retirement plan, life insurance, long-term disability insurance, short-term disability insurance, paid parking/public transportation, paid time off, paid sick and safe time, hours of paid vacation time, weeks of paid parental leave, and paid holidays annually – as applicable.
Pay Range: $50/hr to $55/
See All 31 Lead Analyst Jobs in Cambridge
Find roles in Cambridge that match your experience and apply in just a few clicks.
Find Lead Analyst JobsLead Analyst Job Market in Cambridge
Who's Hiring
- Lila Sciences7

- Flagship Pioneering3

- Moderna2

- Pivotal2

- EGENESIS2

Top Industries Hiring
- Biotechnology & Pharmaceuticals13
- Science & Research9
- Technology & Software5
- Aerospace & Defense2
- Education1
Lead Analyst Jobs in Cambridge: Frequently Asked Questions
How many lead analyst jobs are there in Cambridge?
There are 31+ lead analyst openings in Cambridge, Massachusetts on Migrate Mate as of June 2026. New positions post regularly as Cambridge employers hire.
Which companies hire lead analysts in Cambridge?
Employers hiring lead analysts in Cambridge include Lila Sciences, Flagship Pioneering, and Moderna, based on current listings on Migrate Mate as of June 2026.
Are there remote lead analyst jobs in Cambridge?
Yes. About 19% of lead analyst openings tied to Cambridge are remote or hybrid as of June 2026. The rest are on-site roles based in and around Cambridge.
Which industries hire the most lead analysts in Cambridge?
Most lead analyst openings in Cambridge sit in Biotechnology & Pharmaceuticals, Science & Research, and Technology & Software, per current listings on Migrate Mate as of June 2026.
Related Jobs in Massachusetts
See All 31 Lead Analyst Jobs in Cambridge
Find roles in Cambridge that match your experience and apply in just a few clicks.
Find Lead Analyst Jobs