ML Engineer Visa Sponsorship Jobs in Massachusetts
Massachusetts is one of the strongest states for ML engineer visa sponsorship, with major employers like Amazon, Microsoft, HubSpot, and Wayfair concentrated in Greater Boston and Cambridge. The Route 128 tech corridor and a dense cluster of biotech and AI research firms create steady demand for machine learning talent requiring H-1B visa and other work visa support.
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Get Access To All JobsINTRODUCTION
Mass General Brigham relies on a wide range of professionals, including doctors, nurses, business people, tech experts, researchers, and systems analysts to advance our mission. As a not-for-profit, we support patient care, research, teaching, and community service, striving to provide exceptional care. We believe that high-performing teams drive groundbreaking medical discoveries and invite all applicants to join us and experience what it means to be part of Mass General Brigham.
JOB SUMMARY
The Microbiome AI/Deep Learning Lab in the Massachusetts Host-Microbiome Center and Division of Computational Pathology at Brigham and Women’s Hospital/Harvard Medical School is seeking a computational scientist with experience in microbiome bioinformatics and machine learning. You will develop, deploy, and apply microbiome and bioinformatics machine learning approaches, with a special emphasis on deep learning, to a variety of microbiology data sources. Applications will include forecasting microbial population dynamics in the gut, characterizing the impact of spatial structure of the microbiome, predicting impact of the microbiome on host phenotype, tracking infections in human populations, elucidating microbial metabolism, and discovering functions of uncharacterized microbial metabolites and proteins.
QUALIFICATIONS
A COVER LETTER IS REQUIRED FOR ALL APPLICATIONS.
Applicants Should Have a High Level Of Interest In
- A long-term career in an academic medical environment, with the potential for your work to have a direct impact on healthcare outcomes.
- Applying new deep learning technologies to biomedical problems.
- Advancing knowledge of the microbiome and its role in human health and disease.
- Working on an interdisciplinary team and collaborating with computational, wet lab and clinical scientists.
- Engaging with the broader research community to advance applications of AI/deep learning for the microbiome.
ABOUT THE ENVIRONMENT
The Microbiome AI/Deep Learning Lab is an initiative within the Massachusetts Host-Microbiome Center (MHMC) and the Division of Computational Pathology (DCP) at Brigham and Women’s Hospital (BWH)/Harvard Medical School. With recent funding from the Massachusetts Life Sciences Center, the Lab has built a state-of-the-art compute cluster with extensive GPU and CPU nodes, with the objective of making advanced deep learning technologies broadly available to microbiome researchers. The MHMC is a research and core facility that has worked with 100+ groups in the US and internationally to promote understanding of host-microbiome interactions in health and disease, emphasizing a focus on function to define causative effects of the microbiota and to harness this knowledge in developing new therapies, diagnostics and further commercial applications. The DCP is a research division with a broad mandate to develop and apply advanced computational methods for furthering the understanding, diagnosis and treatment of human diseases. BWH is an HMS affiliated teaching hospital, adjacent to the HMS main quad, and the second largest non-university recipient of NIH research funding.
PRINCIPAL DUTIES AND RESPONSIBILITIES
- Engage in research developing and applying bioinformatic and machine learning approaches, for a variety of microbiology data sources, including next generation sequencing and metabolomic data.
- Substantially contribute to scientific publications and grant applications.
- Analyze datasets and produce visualizations and written reports about scientific findings.
- Deploy computational pipelines on local workstations and on high performance CPU and GPU clusters.
- Organize and curate large datasets using structured approaches, including database systems.
- Engage with trainees and other users of the MHMC to facilitate use of computing resources and application of machine learning technologies for the microbiome.
- Other duties as assigned.
ADDITIONAL JOB DETAILS
- Data Science experience with PhD 2-3 years required or Data Science experience with a Master's 3-5 years required.
- Experience analyzing microbiome data and machine learning applications demonstrated through authorship on high-quality, peer-reviewed scientific publications.
- 3+ years minimum Python programming experience preferred.
- 3+ years minimum experience working in high-performance computing environments preferred.
- Experience with microbiome bioinformatics methods and pipelines for next generation sequencing data analysis.
- Experience with organizing and managing large multi-omics datasets.
- Strong verbal and written communication, and interpersonal skills.
- Experience with deep learning and PyTorch is highly desired.
SKILLS/ABILITIES/COMPETENCIES REQUIRED
- Must be capable of contributing within an interdisciplinary team, exhibit a high level of initiative, and have an eagerness to learn new technologies.
- Ability to manage entire projects in a research environment, from design to implementation, and interpretation of final results.
- Must have experience analyzing microbiome data.
- Must possess advanced knowledge of machine learning, including model development, training, testing and deploying.
- Demonstrated ability to develop and implement computational approaches for analyzing complex biomedical datasets including next generation sequencing data.
- Demonstrated ability to manage large and complex biomedical datasets, using tools such as databases.
- Excellent written and verbal communication skills with demonstrated ability to communicate complex results to both technical and non-technical audiences, through publications and presentations.
- Ability to implement machine learning methods in Python; experience with deep learning and using PyTorch is highly desired.
- Knowledge of software engineering best practices, including source code management/control (e.g., Git) and containerization approaches.
- Experience with high-performance computing environments, including scheduling systems, e.g., SLURM.
- Ability to multitask and prioritize work, to achieve desired goals and deliverables.
- Ability to share expertise, coach, and give general direction to others of different skill sets, backgrounds and levels.
REMOTE TYPE
Onsite
WORK LOCATION
60 Fenwood Road
SCHEDULED WEEKLY HOURS
40
EMPLOYEE TYPE
Regular
WORK SHIFT
Day (United States of America)
PAY RANGE
$93,953.60 - $136,739.20/Annual
GRADE
7
At Mass General Brigham, we believe in recognizing and rewarding the unique value each team member brings to our organization. Our approach to determining base pay is comprehensive, and any offer extended will take into account your skills, relevant experience if applicable, education, certifications and other essential factors. The base pay information provided offers an estimate based on the minimum job qualifications; however, it does not encompass all elements contributing to your total compensation package. In addition to competitive base pay, we offer comprehensive benefits, career advancement opportunities, differentials, premiums and bonuses as applicable and recognition programs designed to celebrate your contributions and support your professional growth. We invite you to apply, and our Talent Acquisition team will provide an overview of your potential compensation and benefits package.
EEO STATEMENT
2200 The Brigham and Women's Hospital, Inc. is an Equal Opportunity Employer. All qualified applicants will receive consideration for employment without regard to race, color, religious creed, national origin, sex, age, gender identity, disability, sexual orientation, military service, genetic information, and/or other status protected under law. We will ensure that all individuals with a disability are provided a reasonable accommodation to participate in the job application or interview process, to perform essential job functions, and to receive other benefits and privileges of employment. To ensure reasonable accommodation for individuals protected by Section 503 of the Rehabilitation Act of 1973, the Vietnam Veteran’s Readjustment Act of 1974, and Title I of the Americans with Disabilities Act of 1990, applicants who require accommodation in the job application process may contact Human Resources at (857)-282-7642.
MASS GENERAL BRIGHAM COMPETENCY FRAMEWORK
At Mass General Brigham, our competency framework defines what effective leadership “looks like” by specifying which behaviors are most critical for successful performance at each job level. The framework is comprised of ten competencies (half People-Focused, half Performance-Focused) and are defined by observable and measurable skills and behaviors that contribute to workplace effectiveness and career success. These competencies are used to evaluate performance, make hiring decisions, identify development needs, mobilize employees across our system, and establish a strong talent pipeline.
INTRODUCTION
Mass General Brigham relies on a wide range of professionals, including doctors, nurses, business people, tech experts, researchers, and systems analysts to advance our mission. As a not-for-profit, we support patient care, research, teaching, and community service, striving to provide exceptional care. We believe that high-performing teams drive groundbreaking medical discoveries and invite all applicants to join us and experience what it means to be part of Mass General Brigham.
JOB SUMMARY
The Microbiome AI/Deep Learning Lab in the Massachusetts Host-Microbiome Center and Division of Computational Pathology at Brigham and Women’s Hospital/Harvard Medical School is seeking a computational scientist with experience in microbiome bioinformatics and machine learning. You will develop, deploy, and apply microbiome and bioinformatics machine learning approaches, with a special emphasis on deep learning, to a variety of microbiology data sources. Applications will include forecasting microbial population dynamics in the gut, characterizing the impact of spatial structure of the microbiome, predicting impact of the microbiome on host phenotype, tracking infections in human populations, elucidating microbial metabolism, and discovering functions of uncharacterized microbial metabolites and proteins.
QUALIFICATIONS
A COVER LETTER IS REQUIRED FOR ALL APPLICATIONS.
Applicants Should Have a High Level Of Interest In
- A long-term career in an academic medical environment, with the potential for your work to have a direct impact on healthcare outcomes.
- Applying new deep learning technologies to biomedical problems.
- Advancing knowledge of the microbiome and its role in human health and disease.
- Working on an interdisciplinary team and collaborating with computational, wet lab and clinical scientists.
- Engaging with the broader research community to advance applications of AI/deep learning for the microbiome.
ABOUT THE ENVIRONMENT
The Microbiome AI/Deep Learning Lab is an initiative within the Massachusetts Host-Microbiome Center (MHMC) and the Division of Computational Pathology (DCP) at Brigham and Women’s Hospital (BWH)/Harvard Medical School. With recent funding from the Massachusetts Life Sciences Center, the Lab has built a state-of-the-art compute cluster with extensive GPU and CPU nodes, with the objective of making advanced deep learning technologies broadly available to microbiome researchers. The MHMC is a research and core facility that has worked with 100+ groups in the US and internationally to promote understanding of host-microbiome interactions in health and disease, emphasizing a focus on function to define causative effects of the microbiota and to harness this knowledge in developing new therapies, diagnostics and further commercial applications. The DCP is a research division with a broad mandate to develop and apply advanced computational methods for furthering the understanding, diagnosis and treatment of human diseases. BWH is an HMS affiliated teaching hospital, adjacent to the HMS main quad, and the second largest non-university recipient of NIH research funding.
PRINCIPAL DUTIES AND RESPONSIBILITIES
- Engage in research developing and applying bioinformatic and machine learning approaches, for a variety of microbiology data sources, including next generation sequencing and metabolomic data.
- Substantially contribute to scientific publications and grant applications.
- Analyze datasets and produce visualizations and written reports about scientific findings.
- Deploy computational pipelines on local workstations and on high performance CPU and GPU clusters.
- Organize and curate large datasets using structured approaches, including database systems.
- Engage with trainees and other users of the MHMC to facilitate use of computing resources and application of machine learning technologies for the microbiome.
- Other duties as assigned.
ADDITIONAL JOB DETAILS
- Data Science experience with PhD 2-3 years required or Data Science experience with a Master's 3-5 years required.
- Experience analyzing microbiome data and machine learning applications demonstrated through authorship on high-quality, peer-reviewed scientific publications.
- 3+ years minimum Python programming experience preferred.
- 3+ years minimum experience working in high-performance computing environments preferred.
- Experience with microbiome bioinformatics methods and pipelines for next generation sequencing data analysis.
- Experience with organizing and managing large multi-omics datasets.
- Strong verbal and written communication, and interpersonal skills.
- Experience with deep learning and PyTorch is highly desired.
SKILLS/ABILITIES/COMPETENCIES REQUIRED
- Must be capable of contributing within an interdisciplinary team, exhibit a high level of initiative, and have an eagerness to learn new technologies.
- Ability to manage entire projects in a research environment, from design to implementation, and interpretation of final results.
- Must have experience analyzing microbiome data.
- Must possess advanced knowledge of machine learning, including model development, training, testing and deploying.
- Demonstrated ability to develop and implement computational approaches for analyzing complex biomedical datasets including next generation sequencing data.
- Demonstrated ability to manage large and complex biomedical datasets, using tools such as databases.
- Excellent written and verbal communication skills with demonstrated ability to communicate complex results to both technical and non-technical audiences, through publications and presentations.
- Ability to implement machine learning methods in Python; experience with deep learning and using PyTorch is highly desired.
- Knowledge of software engineering best practices, including source code management/control (e.g., Git) and containerization approaches.
- Experience with high-performance computing environments, including scheduling systems, e.g., SLURM.
- Ability to multitask and prioritize work, to achieve desired goals and deliverables.
- Ability to share expertise, coach, and give general direction to others of different skill sets, backgrounds and levels.
REMOTE TYPE
Onsite
WORK LOCATION
60 Fenwood Road
SCHEDULED WEEKLY HOURS
40
EMPLOYEE TYPE
Regular
WORK SHIFT
Day (United States of America)
PAY RANGE
$93,953.60 - $136,739.20/Annual
GRADE
7
At Mass General Brigham, we believe in recognizing and rewarding the unique value each team member brings to our organization. Our approach to determining base pay is comprehensive, and any offer extended will take into account your skills, relevant experience if applicable, education, certifications and other essential factors. The base pay information provided offers an estimate based on the minimum job qualifications; however, it does not encompass all elements contributing to your total compensation package. In addition to competitive base pay, we offer comprehensive benefits, career advancement opportunities, differentials, premiums and bonuses as applicable and recognition programs designed to celebrate your contributions and support your professional growth. We invite you to apply, and our Talent Acquisition team will provide an overview of your potential compensation and benefits package.
EEO STATEMENT
2200 The Brigham and Women's Hospital, Inc. is an Equal Opportunity Employer. All qualified applicants will receive consideration for employment without regard to race, color, religious creed, national origin, sex, age, gender identity, disability, sexual orientation, military service, genetic information, and/or other status protected under law. We will ensure that all individuals with a disability are provided a reasonable accommodation to participate in the job application or interview process, to perform essential job functions, and to receive other benefits and privileges of employment. To ensure reasonable accommodation for individuals protected by Section 503 of the Rehabilitation Act of 1973, the Vietnam Veteran’s Readjustment Act of 1974, and Title I of the Americans with Disabilities Act of 1990, applicants who require accommodation in the job application process may contact Human Resources at (857)-282-7642.
MASS GENERAL BRIGHAM COMPETENCY FRAMEWORK
At Mass General Brigham, our competency framework defines what effective leadership “looks like” by specifying which behaviors are most critical for successful performance at each job level. The framework is comprised of ten competencies (half People-Focused, half Performance-Focused) and are defined by observable and measurable skills and behaviors that contribute to workplace effectiveness and career success. These competencies are used to evaluate performance, make hiring decisions, identify development needs, mobilize employees across our system, and establish a strong talent pipeline.
ML Engineer Job Roles in Massachusetts
See all 829+ ML Engineer Jobs in Massachusetts
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Search ML Engineer Jobs in MassachusettsML Engineer Jobs in Massachusetts: Frequently Asked Questions
Which companies sponsor visas for ML engineers in Massachusetts?
Several large employers in Massachusetts have a documented history of sponsoring work visas for ML engineers. Amazon, Microsoft, Wayfair, HubSpot, and Biogen consistently file H-1B petitions for machine learning roles. Boston-area AI startups and biotech firms, including those clustered around Kendall Square in Cambridge, also sponsor regularly, though their volume is smaller than enterprise employers.
Which visa types are most common for ML engineer roles in Massachusetts?
The H-1B is by far the most common visa for ML engineers in Massachusetts, as the role qualifies as a specialty occupation requiring at least a bachelor's degree in computer science, statistics, or a related field. Candidates with extraordinary ability may qualify for the O-1A. Recent graduates on F-1 OPT, particularly those with STEM degrees, can work for up to three years before needing employer-sponsored H-1B status.
How to find ml engineer visa sponsorship jobs in Massachusetts?
Migrate Mate filters job listings specifically by visa sponsorship availability, making it easier to identify ML engineer roles in Massachusetts where employers are actively open to sponsoring. Rather than sorting through general job boards, you can search directly for machine learning positions in Boston, Cambridge, and surrounding tech hubs where sponsorship is confirmed, saving time during a job search that often runs on a tight visa timeline.
Which cities in Massachusetts have the most ML engineer sponsorship jobs?
Boston and Cambridge together account for the majority of ML engineer sponsorship activity in Massachusetts. Cambridge's Kendall Square is particularly dense with AI-focused companies and research institutions. Waltham and Burlington along the Route 128 corridor host established tech and biotech employers who regularly sponsor. Worcester has a smaller but growing presence tied to university-affiliated research and regional tech employers.
Are there any Massachusetts-specific factors ML engineers should know about visa sponsorship?
Massachusetts employers sponsoring H-1B workers must meet Department of Labor prevailing wage requirements, which in the Boston metro area reflect a high-cost, competitive market for ML talent. The state's strong university pipeline, including MIT, Harvard, and Northeastern, means many sponsored candidates transition from F-1 OPT. Biotech and AI research firms in the area often sponsor for highly specialized roles, which can strengthen the specialty occupation determination in an H-1B petition.
What is the prevailing wage for sponsored ml engineer jobs in Massachusetts?
U.S. employers sponsoring a visa must pay at least the prevailing wage, which is what workers in the same role, area, and experience level typically earn. The Department of Labor sets this rate to make sure companies aren't hiring foreign workers simply because they'd accept lower pay than a U.S. worker. It varies by job title, location, and experience. You can look up current prevailing wage rates for any occupation and location using the OFLC Wage Search page.