Program Director Jobs in San Diego, CA

Program Director jobs in San Diego are concentrated in Kearny Mesa, Mission Valley, and downtown's Civic Center corridor, with strong demand across defense and aerospace, healthcare systems, and nonprofit and community services. Employers actively hiring include Merck, Petco, and GovCIO. Scan the live roles below and apply to whichever ones fit.

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Overview

Open roles324+
Top employerMerck
Work type50% On-site
Top credentialBachelor's degree
Companies hiring19

Showing 5 of 324+ Program Director jobs

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Program Director-CalWORKs Employment Services
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Added 1d ago
Program Director-CalWORKs Employment Services
Talent Connect Now
San Diego, California
Program Management
Project Management
Technical Product & Program Management
$115k - $135k/yr
Bachelor's degree

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ADARx Pharmaceuticals
Director, Program Management
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ADARx Pharmaceuticals
Added 1w ago
Director, Program Management
ADARx Pharmaceuticals
San Diego, California
Business Operations
Compliance & Risk
Executive Leadership & C-Suite
$200k - $220k/yr
Master's degree in chemistry

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HAYA Therapeutics
Director I&I Program Lead
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HAYA Therapeutics
Added 2w ago
Director I&I Program Lead
HAYA Therapeutics
San Diego, California
Clinical Support
Healthcare Administration
Medical Specialists
$160k - $190k/yr

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PlayStation
Director, Program Management
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PlayStation
Added 2w ago
Director, Program Management
PlayStation
San Diego, California
Engineering (Non-Software)
Program Management
Project & Program Management
Project Management
$219k - $328k/yr
Hybrid
SAFe Certification
5,001-10,000

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Neurocrine Biosciences
Sr. Director, Program Management
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Neurocrine Biosciences
Added 2w ago
Sr. Director, Program Management
Neurocrine Biosciences
San Diego, California
Business Operations
Business Strategy
Consulting & Professional Services
$219k - $298k/yr
Bachelor of Science
1,001-5,000

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See All 324+ Program Director Jobs in San Diego

Find roles in San Diego that match your experience and apply in just a few clicks.

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Program Director Job Market in San Diego

Who's Hiring

  • Merck
    Merck17
  • Petco
    Petco17
  • GovCIO
    GovCIO17
  • Leidos
    Leidos17
  • Qualcomm
    Qualcomm17

Top Industries Hiring

  • Telecommunications17
  • Technology & Software17
  • Electronics & Hardware17

Program Director Jobs in San Diego: Frequently Asked Questions

How do I get a program director job in San Diego?

Focus your search on San Diego's defense contracting corridor in Kearny Mesa and Sorrento Valley, the large health systems clustered in Mission Valley and Hillcrest, and the nonprofit sector anchored downtown. Candidates who stand out typically bring PMP certification or a sector-specific credential, demonstrable budget ownership, and experience managing cross-functional teams in environments common to San Diego, such as government contracts or federally funded community programs.

Which companies hire program directors in San Diego?

Companies currently hiring program directors in San Diego include Merck, Petco, and GovCIO, per current listings on Migrate Mate as of September 2026. San Diego's employer mix skews toward defense primes, large integrated health systems, military-affiliated nonprofits, and biotech firms operating out of Torrey Pines and UTC.

Are there remote program director jobs in San Diego?

Yes, though remote availability depends heavily on the sector, since program directors overseeing on-site operations, clinical programs, or federal contracts are almost always required in person. About 50% of program director openings tied to San Diego are remote or hybrid as of September 2026, skewing toward roles in tech, education administration, and national nonprofit organizations with San Diego offices.

How can I get a program director job in San Diego with little or no experience?

The most realistic entry path in San Diego is moving up from a program coordinator or program manager role within a local health system, defense contractor, or community-based nonprofit. Organizations like federally qualified health centers in underserved neighborhoods and military transition assistance programs frequently hire coordinator-level staff and promote from within. Building a record managing a single program or grant end-to-end is the credential that opens program director conversations in this market.

Which industries hire the most program directors in San Diego?

San Diego program director roles concentrate in Telecommunications, Technology & Software, and Electronics & Hardware, based on current listings on Migrate Mate as of September 2026. San Diego's large military and veteran population, its extensive network of federally funded health centers, and its established defense industrial base create sustained, recurring demand for program directors across all three sectors.

See All 324+ Program Director Jobs in San Diego

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