Applications Analyst Jobs in Wisconsin
Applications Analyst jobs in Wisconsin concentrate in healthcare IT, insurance, and enterprise software, with demand driven by major systems and financial services firms across the state. Milwaukee, Madison, and Green Bay are the most active hiring metros, where employers like Epic Systems, Advocate Aurora Health, and Northwestern Mutual maintain large, consistent application teams. The strongest openings lean toward EHR configuration, enterprise resource planning, and business systems analysis. Find a role that fits below and apply directly.
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Compassion. Accountability. Collaboration. Foresight. Joy.
These are the Aspirus Core Values; and we are looking for the BEST around to join us as we demonstrate those values Every. Single. Day.
Aspirus Health in WAUSAU, WI is seeking an APPLICATIONS ANALYST to join our INFORMATION TECHNOLOGY team!
The Applications Analyst will have a strong understanding of general principles of information systems and computer usage. Independently researches and seeks solutions to problems and contributes to improving workflow and process. Assists in evaluating systems, preparing an analysis of alternatives, and implementing enhancements to existing systems. Performs project management activities as well as analysis, design, implementation, education, and support of assigned application software. Will be thoroughly familiar with the function and processes of their assigned departments and assist the customer department in the use of the applications at Aspirus, while working to maintain and/or improve patient safety, departmental workflow, and cost containment.
Position involves extensive consulting and communication with physicians, nurses, pharmacists, technologist, and other clinical staff as well as clerical and administrative users, vendors, hospital management/administration, and outside agencies.
HOURS: Full Time, 1.0 FTE, 80 hours every two weeks
Experience/Qualifications
- Knowledge of general principles of information systems and computer usage normally acquired through completion of a Bachelor of Science in Business, Information Technology, clinical area, or related field and/or two to five years’ relevant healthcare/IT experience required.
- Experience with clinical assessment, planning, protocol development, standards, policies and procedures preferred.
- Previous teaching/training and project management experience. Participated in at least one clinical information systems implementation/go-live.
- ITIL course to be completed within one year of hire.
- Very strong working knowledge of hospital clinical and administrative departments, operations, and core process flows. Understands interactions and flows with administrative and financial systems.
- Strong understanding of general principles of information systems and computer usage.
- Strong understanding of the Systems Development Life cycle (SDLC): project definition, user requirements definition, system requirements definition, analysis and design, system build, implementation and training, sustainment.
- Excellent verbal and written communication skills, quick thinking, and problem-solving skills.
- Analytical ability to evaluate systems, test data and/or program logic, and determine proper program execution with some assistance.
- Ability to identify problems, collect data, establish facts, and solve problems related to computer systems/software generally without assistance.
- Ability to prioritize work responsibilities and meet established deadlines generally without assistance.
- High level of expertise using computer tools in a clinical setting required.
- A tolerance for working in a fast-paced work environment.
- Demonstrated ability to multi-task and manage several different issues at a time.
- Annual competencies as required by Aspirus and/or various regulatory agencies based on entity and/or job position.
Employee Benefits
- Full benefits packages available for part- and full-time status.
- Time away from work accrual.
- Retirement plans available.
- Wellness program for employees and their families.
Our Mission: We heal people, promote health and strengthen communities.
Our Vision: Aspirus is a catalyst for creating healthy, thriving communities, trusted and engaged above all others.
As an Aspirus team, we demonstrate caring, we plan to impact the future, work with happiness and enthusiasm, recognize our power to make a difference and improve the health of our communities.
Aspirus Health is a nonprofit, community-directed health system based in Wausau, Wisconsin, serving northeastern Minnesota, northern and central Wisconsin and the Upper Peninsula of Michigan. The health system operates 18 hospitals and 130 outpatient locations with nearly 14,000 team members, including 1,300 employed physicians and advanced practice clinicians. For more information visit aspirus.org.
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See All 12 Applications Analyst Jobs in Wisconsin
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Find Applications Analyst JobsApplications Analyst Jobs by City in Wisconsin
Where Wisconsin roles are concentrated, by current openings.
Applications Analyst Job Market in Wisconsin
A snapshot from current Wisconsin openings, updated as new roles post.
Who's Hiring



Top Industries Hiring
- Healthcare & Medical Services
What Wisconsin Employers Look For
The qualifications that appear most often in applications analyst jobs across Wisconsin.
- Bachelor's degree in information systems, computer science, or a closely related field
- Hands-on experience configuring or supporting enterprise applications such as ERP or EHR systems
- Ability to gather business requirements and translate them into technical solutions or system changes
- Proficiency with SQL or structured data querying for application troubleshooting and reporting
- Experience working in Agile or SDLC project environments with cross-functional teams
- Strong written and verbal communication skills for end-user training and stakeholder documentation
Applications Analyst Jobs in Wisconsin: Frequently Asked Questions
How do you become a applications analyst in Wisconsin?
Most applications analyst roles in Wisconsin require a bachelor's degree in information systems, computer science, or business information technology from an accredited institution. There is no state-issued license for this role in Wisconsin, so employers focus on demonstrated system experience and relevant certifications such as those tied to specific EHR or ERP platforms. Wisconsin technical colleges also offer applied IT programs that can open entry-level doors alongside a four-year degree.
How much do applications analysts make in Wisconsin?
Applications analysts in Wisconsin earn a median of about $100,440 a year, based on May 2025 Bureau of Labor Statistics wage data, ranging from around $66,700 for the lowest 10% to over $132,270 for the top 10%. Pay rises with experience, specialty, and employer.
Which companies hire applications analysts in Wisconsin?
Companies currently hiring applications analysts in Wisconsin include Aspirus Health, Froedtert & MCW, and UW Health, per current listings on Migrate Mate as of September 2026. Wisconsin's concentration of large healthcare networks, insurance carriers, and enterprise software firms makes it one of the more consistent states for steady applications analyst demand.
Which Wisconsin cities have the most applications analyst jobs?
Wausau, Menomonee Falls, and Madison lead Wisconsin for applications analyst openings. Milwaukee drives volume through its dense concentration of financial services, insurance, and health system headquarters, Madison benefits from Epic Systems and a strong university-linked tech sector, and Green Bay reflects demand from regional healthcare and manufacturing firms that run large enterprise application environments.
Are there remote applications analyst jobs in Wisconsin?
Yes, and more than most fields. Applications analyst work is largely desk-based and system-driven, which makes it well suited to remote arrangements. About 86% of applications analyst openings tied to Wisconsin are remote or hybrid as of September 2026, reflecting how broadly Wisconsin employers have adopted flexible work policies for this role. Configuration, documentation, and support tasks in particular are frequently performed fully remotely.
How can I get hired as a applications analyst in Wisconsin with little or no experience?
The most realistic entry path is a help desk or IT support role at a Wisconsin healthcare network or large employer, which builds direct exposure to the enterprise applications analysts configure and maintain. Epic Systems in Verona runs structured onboarding programs that bring in candidates from non-traditional backgrounds, and Advocate Aurora Health and Froedtert Health regularly post junior analyst and implementation associate openings. A relevant certification tied to a specific platform, such as an EHR or ERP vendor credential, gives candidates a measurable edge over others without direct experience.
Where can I find and apply to applications analyst jobs in Wisconsin?
You can find and apply to applications analyst jobs in Wisconsin on Migrate Mate, which lists current openings across the state. Search the available roles, find the ones that fit your background and location, and apply directly to each position.
See All 12 Applications Analyst Jobs in Wisconsin
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