Applications Analyst Jobs in Wisconsin

Applications Analyst jobs in Wisconsin concentrate in healthcare IT, insurance, and enterprise software, with demand driven by major systems and financial services firms across the state. Milwaukee, Madison, and Green Bay are the most active hiring metros, where employers like Epic Systems, Advocate Aurora Health, and Northwestern Mutual maintain large, consistent application teams. The strongest openings lean toward EHR configuration, enterprise resource planning, and business systems analysis. Find a role that fits below and apply directly.

Find Applications Analyst Jobs

Overview

Open roles12
Top employerAspirus Health
Top cityWausau, WI
Cities hiring4
Work type57% Remote
Top industryHealthcare

Showing 5 of 12+ Applications Analyst jobs

Aspirus Health
Applications Analyst
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Aspirus Health
Added 3w ago
Applications Analyst
Aspirus Health
Wausau, Wisconsin
Business Analysis
Business Analyst
Project Management
Bachelor's degree in information technology
10,000+

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Bay Care
Applications Systems Analyst - Corporate Headquarters
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Bay Care
Added 1mo ago
Applications Systems Analyst - Corporate Headquarters
Bay Care
Green Bay, Wisconsin
Business Operations
Program Management
Project Management
Bachelor's degree in management information systems

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UW Health
Applications Analyst - Lab Systems
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UW Health
Added 1mo ago
Applications Analyst - Lab Systems
UW Health
Madison, Wisconsin
IT Support & Systems Administration
Healthcare Administration
Technical Product & Program Management
IT Support
Technical Program Management
Hybrid
Associate's

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Froedtert & MCW
Application Analyst Ii, Fch - Clin Applications - Inpatient
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Froedtert & MCW
Added 1mo ago
Application Analyst Ii, Fch - Clin Applications - Inpatient
Froedtert & MCW
Menomonee Falls, Wisconsin
Business Analysis
Business Analyst
Data Science
Research & Academia
$30.41 - $52.02/hr
Bachelor's degree
5,001-10,000

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Froedtert & MCW
Application Analyst I, Fch - Clin Applications - Ambulatory
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Froedtert & MCW
Added 1mo ago
Application Analyst I, Fch - Clin Applications - Ambulatory
Froedtert & MCW
Menomonee Falls, Wisconsin
Business Analysis
Business Analyst
Data Science
Research & Academia
$28.42 - $48.62/hr
Bachelor's degree
5,001-10,000

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See All 12 Applications Analyst Jobs in Wisconsin

Find roles in Wisconsin that match your experience and apply in just a few clicks.

Find Applications Analyst Jobs

Applications Analyst Jobs by City in Wisconsin

Where Wisconsin roles are concentrated, by current openings.

Wausau
6 jobs
Menomonee Falls
3 jobs
Madison
2 jobs
Green Bay
1 job

Applications Analyst Job Market in Wisconsin

A snapshot from current Wisconsin openings, updated as new roles post.

Who's Hiring

Aspirus Health
Aspirus Health6 open roles
Froedtert & MCW
Froedtert & MCW3 open roles
UW Health
UW Health2 open roles

Top Industries Hiring

  • Healthcare & Medical Services

What Wisconsin Employers Look For

The qualifications that appear most often in applications analyst jobs across Wisconsin.

  • Bachelor's degree in information systems, computer science, or a closely related field
  • Hands-on experience configuring or supporting enterprise applications such as ERP or EHR systems
  • Ability to gather business requirements and translate them into technical solutions or system changes
  • Proficiency with SQL or structured data querying for application troubleshooting and reporting
  • Experience working in Agile or SDLC project environments with cross-functional teams
  • Strong written and verbal communication skills for end-user training and stakeholder documentation

Applications Analyst Jobs in Wisconsin: Frequently Asked Questions

How do you become a applications analyst in Wisconsin?

Most applications analyst roles in Wisconsin require a bachelor's degree in information systems, computer science, or business information technology from an accredited institution. There is no state-issued license for this role in Wisconsin, so employers focus on demonstrated system experience and relevant certifications such as those tied to specific EHR or ERP platforms. Wisconsin technical colleges also offer applied IT programs that can open entry-level doors alongside a four-year degree.

How much do applications analysts make in Wisconsin?

Applications analysts in Wisconsin earn a median of about $100,440 a year, based on May 2025 Bureau of Labor Statistics wage data, ranging from around $66,700 for the lowest 10% to over $132,270 for the top 10%. Pay rises with experience, specialty, and employer.

Which companies hire applications analysts in Wisconsin?

Companies currently hiring applications analysts in Wisconsin include Aspirus Health, Froedtert & MCW, and UW Health, per current listings on Migrate Mate as of September 2026. Wisconsin's concentration of large healthcare networks, insurance carriers, and enterprise software firms makes it one of the more consistent states for steady applications analyst demand.

Which Wisconsin cities have the most applications analyst jobs?

Wausau, Menomonee Falls, and Madison lead Wisconsin for applications analyst openings. Milwaukee drives volume through its dense concentration of financial services, insurance, and health system headquarters, Madison benefits from Epic Systems and a strong university-linked tech sector, and Green Bay reflects demand from regional healthcare and manufacturing firms that run large enterprise application environments.

Are there remote applications analyst jobs in Wisconsin?

Yes, and more than most fields. Applications analyst work is largely desk-based and system-driven, which makes it well suited to remote arrangements. About 86% of applications analyst openings tied to Wisconsin are remote or hybrid as of September 2026, reflecting how broadly Wisconsin employers have adopted flexible work policies for this role. Configuration, documentation, and support tasks in particular are frequently performed fully remotely.

How can I get hired as a applications analyst in Wisconsin with little or no experience?

The most realistic entry path is a help desk or IT support role at a Wisconsin healthcare network or large employer, which builds direct exposure to the enterprise applications analysts configure and maintain. Epic Systems in Verona runs structured onboarding programs that bring in candidates from non-traditional backgrounds, and Advocate Aurora Health and Froedtert Health regularly post junior analyst and implementation associate openings. A relevant certification tied to a specific platform, such as an EHR or ERP vendor credential, gives candidates a measurable edge over others without direct experience.

Where can I find and apply to applications analyst jobs in Wisconsin?

You can find and apply to applications analyst jobs in Wisconsin on Migrate Mate, which lists current openings across the state. Search the available roles, find the ones that fit your background and location, and apply directly to each position.

See All 12 Applications Analyst Jobs in Wisconsin

Find roles in Wisconsin that match your experience and apply in just a few clicks.

Find Applications Analyst Jobs