Operations Director Jobs in San Diego, CA

Operations Director jobs in San Diego are concentrated in biotech and life sciences corridors like Torrey Pines and Sorrento Valley, defense and tech clusters in Kearny Mesa, and healthcare systems across Mission Valley and downtown. Employers hiring right now include Travere Therapeutics, Neurocrine Biosciences, and XiFin. Find a role that fits below and apply directly.

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Overview

Open roles444+
Top employerTravere Therapeutics
Work type38% Remote
Top credentialMaster's degree in business administration
Companies hiring19

Showing 5 of 444+ Operations Director jobs

Mesa Labs
Director, Operations
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Mesa Labs
Added 3d ago
Director, Operations
Mesa Labs
San Diego, California
Business Operations
Program Management
Project Management
$155k - $193k/yr
On-Site
Six Sigma Certification
501-1,000

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XiFin
Director, Customer Financial Operations
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XiFin
Added 3d ago
Director, Customer Financial Operations
XiFin
San Diego, California
Business Strategy
Corporate Development & M&A
Growth Marketing
$135k - $170k/yr
Master's degree in business administration
501-1,000

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Challenged Athletes
Chief Operating Officer (COO)
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Challenged Athletes
Added 6d ago
Chief Operating Officer (COO)
Challenged Athletes
San Diego, California
Business Strategy
Corporate Development & M&A
Growth Marketing
$150k - $170k/yr
Hybrid
Master's degree in public administration
2-10

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E
Director of Facilities Operations
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E
Added 1w ago
Director of Facilities Operations
ELE Collective
San Diego, California
Engineering (Non-Software)
Maintenance & Repair
Specialized Engineering
$110k - $130k/yr
On-Site
EPA Refrigeration Certification

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County of San Diego
Assistant Director, Departmental Operations-Public Health Services
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County of San Diego
Added 1w ago
Assistant Director, Departmental Operations-Public Health Services
County of San Diego
San Diego, California
Clinical Support
Healthcare Administration
Human Resources
$195k - $200k/yr
Military encouraged
10,000+

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See All 444+ Operations Director Jobs in San Diego

Find roles in San Diego that match your experience and apply in just a few clicks.

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Operations Director Job Market in San Diego

Who's Hiring

  • Travere Therapeutics
    Travere Therapeutics42
  • Neurocrine Biosciences
    Neurocrine Biosciences42
  • XiFin
    XiFin21
  • Zipdev
    Zipdev21
  • MedImpact
    MedImpact21

Top Industries Hiring

  • Sports & Recreation
  • Biotechnology & Pharmaceuticals

Operations Director Jobs in San Diego: Frequently Asked Questions

How do I get a operations director job in San Diego?

Start by targeting San Diego's strongest hiring sectors: biotech and life sciences, defense contracting, healthcare systems, and logistics tied to the port and military installations. Employers in Torrey Pines, Sorrento Valley, and Kearny Mesa consistently post operations leadership roles. Candidates who can show cross-functional leadership across supply chain, compliance, or clinical operations, and who have built networks through local industry groups, tend to move fastest in this market.

Which companies hire operations directors in San Diego?

Companies currently hiring operations directors in San Diego include Travere Therapeutics, Neurocrine Biosciences, and XiFin, per current listings on Migrate Mate as of September 2026. The local market includes a strong mix of large defense contractors, multi-site healthcare systems, and mid-size biotech firms scaling their operations teams.

Are there remote operations director jobs in San Diego?

Yes, though remote availability depends heavily on the role. Operations director positions tied to physical sites, lab environments, or military facilities are almost always on-site, while roles focused on vendor management, process strategy, or digital operations lean more hybrid. About 69% of operations director openings tied to San Diego are remote or hybrid as of September 2026. Tech-adjacent and SaaS companies in the downtown and Sorrento Mesa corridors tend to offer the most flexible arrangements.

How can I get a operations director job in San Diego with little or no experience?

The most realistic path is moving up from an operations manager or senior coordinator role within a San Diego biotech, healthcare, or logistics company. Employers like large hospital networks and defense subcontractors often promote internally and value tenure over credentials at the director level. Building visibility through SDMBA events, local APICS chapters, and life sciences networking groups can open doors, as can targeting smaller biotech startups in Torrey Pines or Sorrento Valley that need their first dedicated operations lead.

Which industries hire the most operations directors in San Diego?

San Diego operations director roles concentrate in Sports & Recreation and Biotechnology & Pharmaceuticals, based on current listings on Migrate Mate as of September 2026. The city's deep base of biotech research firms, military and defense contractors, and large healthcare systems creates consistent demand for operations leadership across compliance-heavy, high-stakes environments.

See All 444+ Operations Director Jobs in San Diego

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