Sr Software Development Manager Jobs in New Jersey
Sr Software Development Manager jobs in New Jersey are in strong demand across financial services, pharmaceuticals, telecommunications, and defense contracting, with openings at every level from newly promoted engineering leads through seasoned VP-adjacent managers. The busiest hiring corridors are Jersey City, Princeton, and Parsippany, where employers like JPMorgan Chase, Johnson & Johnson, and Cognizant maintain large technology operations. Roles with the deepest pipelines concentrate in agile transformation leadership, cloud infrastructure management, and full-stack product development. Find a role that fits below and apply directly.
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See related jobsSr Bioinformatics Software Engineer – Pipeline Development (Remote, US)
We are looking to hire a candidate with the mentioned skill sets and experience for one of our clients within the diagnostics and pharma services company. This is contracting and REMOTE role.
Job Summary
We are seeking an experienced Senior Bioinformatics Software Engineer to design, develop, and maintain scalable, production-grade NGS bioinformatics pipelines supporting clinical diagnostics and genomic applications.
The ideal candidate will have strong hands-on experience with Nextflow, Seqera Platform, Python, AWS, Docker, and CI/CD, along with expertise in clinical-grade NGS pipeline development and regulated software environments.
Key Responsibilities
- Design, develop, and optimize scalable NGS bioinformatics pipelines for clinical diagnostic applications.
- Build and maintain workflow orchestration using Nextflow and Seqera Platform.
- Develop production-ready bioinformatics software using advanced Python programming.
- Deploy, scale, and optimize genomic analysis pipelines on AWS and AWS HealthOmics.
- Implement containerized workflows using Docker and/or Singularity.
- Develop CI/CD pipelines, automated testing, regression testing, and controlled software releases.
- Ensure reproducibility, traceability, validation, and compliance with clinical software standards.
- Collaborate with bioinformatics scientists, R&D, DevOps, and clinical teams to transition research algorithms into production environments.
- Optimize pipeline performance, scalability, reliability, and cloud infrastructure costs.
Required Qualifications
- MS or PhD in Bioinformatics, Computer Science, Engineering, or a related field.
- 7+ years of relevant experience, including 5–8+ years in bioinformatics software engineering.
- Strong hands-on experience developing NGS analysis pipelines in production environments.
- Advanced proficiency in Python and software engineering best practices.
- Strong experience with Nextflow and Seqera Platform.
- Experience deploying and scaling bioinformatics workflows on AWS.
- Hands-on experience with Docker, Git, CI/CD, and automated testing.
- Experience developing software in regulated clinical environments (ISO 13485, IEC 62304, ISO 15189, or equivalent).
- Understanding of NGS assays, genomic data processing, and clinical diagnostics.
Preferred Qualifications
- Experience with DRAGEN, Sentieon, or similar NGS analysis tools.
- Hands-on experience with AWS HealthOmics.
- Knowledge of AWS EC2, Batch, S3, and Lambda.
- Experience with oncology genomics, liquid biopsy, or molecular diagnostics.
- Familiarity with Singularity and workflow performance optimization.
Other Job Details:
- Job Type: C2C or W2.
- Duration: 6+ months with high possibility of extension.
- Location: REMOTE.
- Interviews: Video interviews.
- Docs required: ID proof will be required.
Why Should You Apply?
Work with cutting edge NGS technologies, build scalable bioinformatics pipelines and contribute to innovative cancer diagnostics using Nextflow, Python and AWS. Chance to contribute to innovative cancer diagnostics using Nextflow, Python, and AWS.
Sr Bioinformatics Software Engineer – Pipeline Development (Remote, US)
We are looking to hire a candidate with the mentioned skill sets and experience for one of our clients within the diagnostics and pharma services company. This is contracting and REMOTE role.
Job Summary
We are seeking an experienced Senior Bioinformatics Software Engineer to design, develop, and maintain scalable, production-grade NGS bioinformatics pipelines supporting clinical diagnostics and genomic applications.
The ideal candidate will have strong hands-on experience with Nextflow, Seqera Platform, Python, AWS, Docker, and CI/CD, along with expertise in clinical-grade NGS pipeline development and regulated software environments.
Key Responsibilities
- Design, develop, and optimize scalable NGS bioinformatics pipelines for clinical diagnostic applications.
- Build and maintain workflow orchestration using Nextflow and Seqera Platform.
- Develop production-ready bioinformatics software using advanced Python programming.
- Deploy, scale, and optimize genomic analysis pipelines on AWS and AWS HealthOmics.
- Implement containerized workflows using Docker and/or Singularity.
- Develop CI/CD pipelines, automated testing, regression testing, and controlled software releases.
- Ensure reproducibility, traceability, validation, and compliance with clinical software standards.
- Collaborate with bioinformatics scientists, R&D, DevOps, and clinical teams to transition research algorithms into production environments.
- Optimize pipeline performance, scalability, reliability, and cloud infrastructure costs.
Required Qualifications
- MS or PhD in Bioinformatics, Computer Science, Engineering, or a related field.
- 7+ years of relevant experience, including 5–8+ years in bioinformatics software engineering.
- Strong hands-on experience developing NGS analysis pipelines in production environments.
- Advanced proficiency in Python and software engineering best practices.
- Strong experience with Nextflow and Seqera Platform.
- Experience deploying and scaling bioinformatics workflows on AWS.
- Hands-on experience with Docker, Git, CI/CD, and automated testing.
- Experience developing software in regulated clinical environments (ISO 13485, IEC 62304, ISO 15189, or equivalent).
- Understanding of NGS assays, genomic data processing, and clinical diagnostics.
Preferred Qualifications
- Experience with DRAGEN, Sentieon, or similar NGS analysis tools.
- Hands-on experience with AWS HealthOmics.
- Knowledge of AWS EC2, Batch, S3, and Lambda.
- Experience with oncology genomics, liquid biopsy, or molecular diagnostics.
- Familiarity with Singularity and workflow performance optimization.
Other Job Details:
- Job Type: C2C or W2.
- Duration: 6+ months with high possibility of extension.
- Location: REMOTE.
- Interviews: Video interviews.
- Docs required: ID proof will be required.
Why Should You Apply?
Work with cutting edge NGS technologies, build scalable bioinformatics pipelines and contribute to innovative cancer diagnostics using Nextflow, Python and AWS. Chance to contribute to innovative cancer diagnostics using Nextflow, Python, and AWS.
See All 5 Sr Software Development Manager Jobs in New Jersey
Find roles in New Jersey that match your experience and apply in just a few clicks.
Find JobsSr Software Development Manager Jobs by City in New Jersey
Where New Jersey roles are concentrated, by current openings.
Sr Software Development Manager Job Market in New Jersey
A snapshot from current New Jersey openings, updated as new roles post.
Who's Hiring
What New Jersey Employers Look For
The qualifications that appear most often in sr software development manager jobs across New Jersey.
- Bachelor's or master's degree in computer science, software engineering, or a closely related field
- Seven or more years of software engineering experience with at least three in people management
- Demonstrated ability to lead multiple agile or scrum teams simultaneously across a product portfolio
- Deep hands-on experience with cloud platforms such as AWS, Azure, or Google Cloud
- Strong cross-functional collaboration skills working with product, QA, and business stakeholders
- Experience managing full software development lifecycles from planning through production release
Sr Software Development Manager Jobs in New Jersey: Frequently Asked Questions
How do you become a sr software development manager in New Jersey?
Most sr software development managers in New Jersey reach the role by progressing from senior software engineer to team lead or engineering manager before stepping into a director-level scope. No state-issued license is required, but New Jersey employers in financial services and pharma typically expect a bachelor's degree in computer science or a related field, along with a portfolio of shipped products and a history of growing engineering teams. Certifications in agile, AWS, or Google Cloud strengthen candidates competing in the state's dense tech corridor.
Which companies hire sr software development managers in New Jersey?
Employers hiring sr software development managers in New Jersey right now include Fiserv, Audible, and CVS Health, based on current listings on Migrate Mate as of November 2026. New Jersey's concentration of Fortune 500 pharmaceutical, financial, and telecom headquarters means hiring tends to be consistent rather than tied to a single boom-and-bust sector.
Which New Jersey cities have the most sr software development manager jobs?
Jersey City, Newark, and Trenton have the most sr software development manager openings in New Jersey. Jersey City draws volume from Wall Street-adjacent financial technology operations, Princeton anchors pharmaceutical and life sciences engineering hubs, and Parsippany serves as a regional headquarters cluster for consulting and telecom firms that staff large engineering organizations.
Are there remote sr software development manager jobs in New Jersey?
Yes, and more than most fields, since sr software development manager work is inherently desk-based and conducted through digital collaboration tools. About 100% of sr software development manager openings tied to New Jersey are remote or hybrid as of November 2026, reflecting continued flexibility across the state's tech and financial sectors. Strategic planning, one-on-ones, and cross-team coordination are the duties most commonly performed fully remotely.
How can I get hired as a sr software development manager in New Jersey with little or no experience?
The most realistic entry path is moving into an engineering team lead role first, which New Jersey employers in pharma and financial technology treat as the proving ground for management. Companies like Cognizant and Conduent in New Jersey hire associate managers from senior individual-contributor roles, especially candidates who have informally mentored junior engineers or driven agile ceremonies. Building a visible record of technical mentorship, completing a PMP or Certified Scrum Master credential, and targeting mid-size New Jersey product companies rather than large enterprise shops increases early access to management scope.
Where can I find and apply to sr software development manager jobs in New Jersey?
You can find and apply to sr software development manager jobs in New Jersey on Migrate Mate, which lists current openings across the state's tech, pharma, and financial services sectors. Find a role that fits and apply directly from the listing.
See All 5 Sr Software Development Manager Jobs in New Jersey
Find roles in New Jersey that match your experience and apply in just a few clicks.
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