STEM OPT Applications Manager Jobs
Applications Manager roles sit at the intersection of technical systems knowledge and organizational leadership, making them a strong fit for STEM OPT graduates in computer science, information systems, or engineering. Your 24-month STEM OPT extension applies here, provided your employer is enrolled in E-Verify and your role ties directly to your STEM degree.
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Get Access To All JobsINTRODUCTION
Are you ready to accelerate your potential and make a real difference within life sciences, diagnostics and biotechnology?
At Integrated DNA Technologies (IDT), one of Danaher’s 15+ operating companies, our work saves lives—and we’re all united by a shared commitment to innovate for tangible impact.
You’ll thrive in a culture of belonging where you and your unique viewpoint matter. And by harnessing Danaher’s system of continuous improvement, you help turn ideas into impact – innovating at the speed of life.
Our team at Integrated DNA Technologies (IDT), is united by a commitment to collaboration and scientific excellence, building on a strong foundation of innovation, expertise, and reliability. Guided by our vision to help researchers rapidly move from the lab to life-changing advances, we work closely with global partners to accelerate progress and genomics breakthroughs across fields like cancer, infectious disease, rare genetic disorders, and more. At IDT, you’ll be part of a culture rooted in continuous learning and improvement—where your growth fuels our mission to accelerate the pace of genomics and helps shape a healthier, brighter future for all.
Learn about the Danaher Business System which makes everything possible.
ROLE AND RESPONSIBILITIES
The Applications Scientist – NGS Design is responsible for providing expert technical support and custom NGS panel design for customers, Sales, and internal teams throughout the pre-sales process, while supporting collaborative projects and documenting customer interactions.
This position reports to the Scientific Applications Support Manager - NGS and is part of the NGS Design group within the larger Scientific Applications Support umbrella. This role is located in Coralville, IA or Raleigh, NC and will be an on-site role.
In this role, you will have the opportunity to:
- Provide high quality and prompt xGen hybridization and amplicon custom panel designs during the pre-sales process.
- Provide technical product support to customers in the form of presentations, conference calls, and email-based support.
- Support other IDT service departments and IDT Sales teams through consultation or escalation of product questions, customer issues, and technical inquiries as needed.
- Document all incoming and outgoing customer interactions in IDT’s Customer Relationship Management (CRM) database.
- Provide backup design and analysis support for collaborative projects, strategic partners, and NGS applications development.
BASIC QUALIFICATIONS
The essential requirements of the job include:
- Bachelor’s degree (in Molecular Biology, Biochemistry, Genetics, Biology, Chemistry, Bioinformatics); Master’s degree or PhD preferred.
- Deep expertise in NGS applications with >3 years in the genomics industry preferred.
- Experience designing custom capture panels for target enrichment, with >1 year experience preferred.
- Effective written and verbal communication skills with message appropriately tailored to audience.
- Capable of understanding and articulating complex scientific, interpersonal, regulatory, and business issues.
PREFERRED QUALIFICATIONS
It would be a plus if you also possess previous experience in:
- Experience in a customer support or customer-facing role.
- Advanced theoretical knowledge of, practical experience, and troubleshooting experience in NGS library preparation and targeted resequencing workflows.
- NGS bioinformatics algorithms/software, extensive Python and Galaxy experience preferred.
IDT, a Danaher operating company, offers a broad array of comprehensive, competitive benefit programs that add value to our lives. Whether it’s a health care program or paid time off, our programs contribute to life beyond the job. Check out our benefits at Danaher Benefits Info.
LI-DN1
Join our winning team today. Together, we’ll accelerate the real-life impact of tomorrow’s science and technology. We partner with customers across the globe to help them solve their most complex challenges, architecting solutions that bring the power of science to life.
INTRODUCTION
Are you ready to accelerate your potential and make a real difference within life sciences, diagnostics and biotechnology?
At Integrated DNA Technologies (IDT), one of Danaher’s 15+ operating companies, our work saves lives—and we’re all united by a shared commitment to innovate for tangible impact.
You’ll thrive in a culture of belonging where you and your unique viewpoint matter. And by harnessing Danaher’s system of continuous improvement, you help turn ideas into impact – innovating at the speed of life.
Our team at Integrated DNA Technologies (IDT), is united by a commitment to collaboration and scientific excellence, building on a strong foundation of innovation, expertise, and reliability. Guided by our vision to help researchers rapidly move from the lab to life-changing advances, we work closely with global partners to accelerate progress and genomics breakthroughs across fields like cancer, infectious disease, rare genetic disorders, and more. At IDT, you’ll be part of a culture rooted in continuous learning and improvement—where your growth fuels our mission to accelerate the pace of genomics and helps shape a healthier, brighter future for all.
Learn about the Danaher Business System which makes everything possible.
ROLE AND RESPONSIBILITIES
The Applications Scientist – NGS Design is responsible for providing expert technical support and custom NGS panel design for customers, Sales, and internal teams throughout the pre-sales process, while supporting collaborative projects and documenting customer interactions.
This position reports to the Scientific Applications Support Manager - NGS and is part of the NGS Design group within the larger Scientific Applications Support umbrella. This role is located in Coralville, IA or Raleigh, NC and will be an on-site role.
In this role, you will have the opportunity to:
- Provide high quality and prompt xGen hybridization and amplicon custom panel designs during the pre-sales process.
- Provide technical product support to customers in the form of presentations, conference calls, and email-based support.
- Support other IDT service departments and IDT Sales teams through consultation or escalation of product questions, customer issues, and technical inquiries as needed.
- Document all incoming and outgoing customer interactions in IDT’s Customer Relationship Management (CRM) database.
- Provide backup design and analysis support for collaborative projects, strategic partners, and NGS applications development.
BASIC QUALIFICATIONS
The essential requirements of the job include:
- Bachelor’s degree (in Molecular Biology, Biochemistry, Genetics, Biology, Chemistry, Bioinformatics); Master’s degree or PhD preferred.
- Deep expertise in NGS applications with >3 years in the genomics industry preferred.
- Experience designing custom capture panels for target enrichment, with >1 year experience preferred.
- Effective written and verbal communication skills with message appropriately tailored to audience.
- Capable of understanding and articulating complex scientific, interpersonal, regulatory, and business issues.
PREFERRED QUALIFICATIONS
It would be a plus if you also possess previous experience in:
- Experience in a customer support or customer-facing role.
- Advanced theoretical knowledge of, practical experience, and troubleshooting experience in NGS library preparation and targeted resequencing workflows.
- NGS bioinformatics algorithms/software, extensive Python and Galaxy experience preferred.
IDT, a Danaher operating company, offers a broad array of comprehensive, competitive benefit programs that add value to our lives. Whether it’s a health care program or paid time off, our programs contribute to life beyond the job. Check out our benefits at Danaher Benefits Info.
LI-DN1
Join our winning team today. Together, we’ll accelerate the real-life impact of tomorrow’s science and technology. We partner with customers across the globe to help them solve their most complex challenges, architecting solutions that bring the power of science to life.
See all 206+ STEM OPT Applications Manager Jobs
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Get Access To All JobsTips for Finding STEM OPT Authorization as an Applications Manager
Verify your CIP code before applying
Pull your degree's Classification of Instructional Programs code from your transcripts and confirm it appears on the official STEM Designated Degree Program List. Applications Manager roles require a direct STEM nexus, and a mismatched CIP code will sink your I-983 approval.
Check E-Verify enrollment before accepting offers
STEM OPT employers must be enrolled in E-Verify before your extension starts. Ask hiring managers directly whether the company is currently enrolled, not just registered. An employer who completed enrollment years ago but let it lapse cannot sponsor your extension.
Target employers with active LCA filings for technical managers
DOL Labor Condition Application data shows which companies regularly sponsor work authorization for applications and systems management roles. Searching this data through Migrate Mate surfaces employers who have already navigated the process for roles matching your background.
Frame your I-983 training plan around systems outcomes
Your I-983 must connect your Applications Manager duties to specific STEM learning objectives, not just job responsibilities. Document how you'll apply engineering or computer science principles to software lifecycle decisions, architecture reviews, or systems integration, not generic management tasks.
Time your extension filing against your OPT expiration date
Your DSO must recommend the STEM OPT extension in SEVIS, and USCIS must receive your I-765 at least 90 days before your current EAD expires. Applications Manager hiring cycles run long, so factor in a 10-to-12 week offer-to-start timeline when targeting roles.
Benchmark your offer against OFLC prevailing wage data
Use the OFLC Wage Search to look up prevailing wages for Applications Manager roles under the relevant Standard Occupational Classification code in your target metro area. An offer below the Level I or II threshold can signal E-Verify and STEM OPT compliance risk before the process begins.
Frequently Asked Questions
Does an Applications Manager role qualify for the STEM OPT extension?
It depends on your degree field and how the role is structured. If you hold a STEM degree with a qualifying CIP code and your Applications Manager duties directly apply that technical knowledge, such as overseeing enterprise software systems, managing application architecture, or leading technical implementation projects, the role can qualify. Your DSO will assess the connection when approving your I-983 training plan.
What STEM degrees support a STEM OPT extension for this role?
Degrees in computer science, information systems, software engineering, computer engineering, and related fields commonly support Applications Manager STEM OPT extensions. The degree must appear on the STEM Designated Degree Program List by CIP code. A degree in business administration or general management typically will not qualify, even if your role is heavily technical.
How do I confirm my employer is enrolled in E-Verify before my extension starts?
Ask the employer for their E-Verify company ID number and verify active enrollment status through the E-Verify employer search tool. Enrollment must be active at the time your STEM OPT extension begins, not just at the time of your job offer. Your DSO cannot approve the I-983 for an employer that is not currently enrolled.
What goes into the I-983 training plan for an Applications Manager position?
The I-983 must describe specific learning objectives tied to your STEM degree, the supervision structure, and how your manager will evaluate your progress. For an Applications Manager role, this means documenting how you'll apply computer science or engineering principles to decisions about application infrastructure, system reliability, software procurement, or technical team leadership, with formal evaluations at 12-month intervals.
Where can I find Applications Manager jobs where employers are already prepared to support STEM OPT?
Migrate Mate filters Applications Manager listings for employers with verified E-Verify enrollment and active work authorization sponsorship history, so you're not cold-applying to companies unfamiliar with STEM OPT requirements. This matters because STEM OPT compliance involves employer obligations around I-983 reporting and SEVIS updates that many employers haven't handled before.