Applications Manager Jobs in New York
Applications Manager jobs in New York are consistently in demand, with openings concentrated in financial services, healthcare IT, and enterprise software across a market that runs from entry-level analysts to senior directors. New York City, Albany, and Buffalo are the primary hiring hubs, where major employers like JPMorgan Chase, NYU Langone Health, and IBM maintain deep applications management teams. The most sought-after specialties in New York listings include ERP administration, cloud application lifecycle management, and healthcare systems integration. Find a role that fits below and apply directly.
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INTRODUCTION
Essen Health Care is the largest privately held, multispecialty medical group in New York, providing high-quality, compassionate care to some of the state’s most vulnerable and underserved residents. Founded in 1999, we’ve grown from a single primary care office into a network of 50+ locations offering urgent care, primary care and specialty services, from women’s health to endocrinology and psychiatry. We also provide nursing home support, care management, and in-home care through our Essen House Calls program. Guided by a Population Health model, our team of 500+ providers deliver care in-person, at home, or via telehealth, ensuring patients get the support they need when and where they need it. We’re looking for talented, motivated individuals to join our growing team. Whether you’re a medical provider, administrator, or operations professional, there’s a career here for you. Join us in making a real difference in the health of our community.
JOB SUMMARY
Essen Healthcare is currently seeking a full-time eClinicalworks Application Manager. The Clinical Application Manager works in conjunction with the VP Of IT Applications as part of a team to support and maintain the clinical information system and enterprise application. This role will collaborate with medical, billing, and operational leaders to standardize, streamline, and optimize clinical workflows to meet the strategic goals of the organization. The Application Support Manager serves in the EMR Department and works in our Bronx Administrative office in New York City. The Clinical Application Manager will be responsible for supporting the following areas:
- Managing Enterprise Clinical Applications and EMR
- IT Operations & Implementation
- Interdepartmental IT frameworks, processes, and procedures
- Growth & Expansion
Responsibilities
- Acts as a subject matter expert and advocate for the EMR application supported, requiring depth and breadth in their knowledge of the business, technologies, and integration with other clinical applications
- Monitoring and managing the project resources, scope and timeline
- Provides technical oversight and direction to eClinicalworks onshore/offshore EMR team
- Identify and access user needs to provide effective solution and support in a proactive manner that meet the business requirements
- Effectively communicates to 3rd party vendors on the business requirements and drives the solution to closure
- Provides technical support to business users and engages vendor as appropriate to effectively address the issues in a timely manner
- Ensures clinical workflows are properly developed, tested, and implemented in production to drive business outcomes
- Develop and document clinical workflows, configure features and functions in EMR and help support training the business capabilities to end users
- Effectively manages and support the systems integration (Lab, Imaging etc.) with EMR
- Participates and leads in the review and testing of major releases and upgrades, evaluating new functionality and master file changes for new features including training and support
- Serves as EMR steward and liaison between clinical users, technical teams and vendors to ensure that technical delivery aligns with strategic direction
- Leads monthly EMR meetings with clinical and operations team
- Lead change by influencing and educating business, IT and partners
- Assist users in developing best practices and optimization goals and ensure the system is providing the improved and desired level of patient care
- Provide end user Tier II Support
- Identify areas of improvements for existing systems and new opportunities that will drive value to the business and support the organizational goals in a broader sense
- Frequently travels from location to location within the healthcare system to complete gap analysis
- Supports end users with at-the-elbow go-live support, post-live refresher, optimization, new hire, and skills-enhancement training
BASIC QUALIFICATIONS
- Bachelor's degree
- Minimum 2-4 years experience managing and support EMR
- Proficient with the full Microsoft Office 365 Suite of applications (e.g., Word, Excel, PowerPoint, Project, Outlook, Teams, SharePoint, Visio, etc.)
- Able to demonstrate strong communication skills when interacting with all levels of the organization
- Working knowledge of relevant operational and clinical workflows
- eClinicalworks experience required
- Extensive knowledge in business functions especially in community health or urgent care or hospital settings
- Strong analytical and sense of urgency required
- Ability to establish and maintain positive relationship with business users, technical team, and partners
Equal Opportunity Employer:
Essen Health care is proud to be an equal opportunity employer, and we seek candidates who desire to work in and serve an ethnically diverse population.
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Find Applications Manager JobsApplications Manager Jobs by City in New York
Where New York roles are concentrated, by current openings.
Applications Manager Job Market in New York
A snapshot from current New York openings, updated as new roles post.
Who's Hiring
- BlackRock1

- Essen Health Care1

- Ingram Micro1

- Kaleida Health1

- Marsh McLennan Agency1

Top Industries Hiring
- Consulting & Professional Services2
- Investment & Asset Management2
- Education1
- Healthcare & Medical Services1
- Technology & Software1
What New York Employers Look For
The qualifications that appear most often in applications manager jobs across New York.
- Bachelor's degree in computer science, information systems, or a related technical field
- Proven experience managing enterprise application portfolios including ERP or CRM platforms
- Familiarity with ITIL frameworks and application lifecycle management best practices
- Strong project management skills with experience coordinating cross-functional technology teams
- Proficiency with cloud platforms such as AWS, Azure, or Google Cloud in application environments
- Excellent communication skills for translating technical requirements to non-technical stakeholders
Applications Manager Jobs in New York: Frequently Asked Questions
How do you become a applications manager in New York?
Most applications managers in New York enter the role after earning a bachelor's degree in computer science, information systems, or a related field, then building several years of experience in application support, systems analysis, or IT project management. New York employers in finance and healthcare frequently promote from within, so starting as a systems analyst or application support specialist at a large institution is a common path. Certifications such as PMP or ITIL are regularly referenced in New York postings and strengthen candidacy.
How much do applications managers make in New York?
Applications managers in New York earn a median of about $214,300 a year, based on May 2025 Bureau of Labor Statistics wage data, ranging from around $134,870 for the lowest 10% to over $323,670 for the top 10%. Pay rises with experience, specialty, and employer.
Which companies hire applications managers in New York?
Employers hiring applications managers in New York right now include BlackRock, Essen Health Care, and Ingram Micro, based on current listings on Migrate Mate as of June 2026. New York's concentration of large financial institutions, major hospital networks, and enterprise technology firms means that hiring is consistent year-round rather than seasonal.
Which New York cities have the most applications manager jobs?
Buffalo, New York, and Bronx have the most applications manager openings in New York. New York City dominates because of its density of financial services headquarters, major hospital systems, and global technology offices, while Albany draws demand from state government IT departments and healthcare networks, and Buffalo's growing tech and insurance sectors support a steady share of openings.
Are there remote applications manager jobs in New York?
Yes, and more than most IT roles. About 29% of applications manager openings tied to New York are remote or hybrid as of June 2026, reflecting how much of the work involves system administration, vendor coordination, and documentation that can be done off-site. The portions most likely to require on-site presence are initial system rollouts and cross-departmental training sessions.
How can I get hired as a applications manager in New York with little or no experience?
The most realistic entry path is landing a junior application support or systems analyst role at a large New York institution, then moving into management as you build a portfolio of projects. Major New York employers such as hospital networks affiliated with the SUNY system and large financial firms often hire associate IT analysts directly from college. Building proficiency on a widely used platform like Salesforce or SAP, earning an entry-level certification, and documenting even academic or internship project work helps candidates stand out in a competitive market.
Where can I find and apply to applications manager jobs in New York?
You can find and apply to applications manager jobs in New York on Migrate Mate, which lists current openings from employers actively hiring in the state. Find roles that fit your experience and apply directly through each listing without additional sign-up steps.
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