Warehouse Operations Manager Jobs in New York
Warehouse Operations Manager jobs in New York are consistently in demand across the state's dense logistics, e-commerce fulfillment, and food distribution sectors, with openings at every level from shift supervisor stepping into management through senior directors overseeing multi-site networks. The heaviest hiring concentrates in New York City, the Bronx, and the Hudson Valley corridor, where employers like Amazon, FedEx, and Sysco maintain major distribution and fulfillment operations. Cold-chain logistics, last-mile delivery coordination, and cross-dock operations are among the most sought-after specialties right now. Find a role that fits below and apply directly.
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INTRODUCTION
QuidelOrtho unites the strengths of Quidel Corporation and Ortho Clinical Diagnostics, creating a world-leading in vitro diagnostics company with award-winning expertise in immunoassay and molecular testing, clinical chemistry and transfusion medicine. We are more than 6,000 strong and do business in over 130 countries, providing answers with fast, accurate and consistent testing where and when they are needed most – home to hospital, lab to clinic.
Our culture puts our team members first and prioritizes actions that support happiness, inspiration and engagement. We strive to build meaningful connections with each other as we believe that employee happiness and business success are linked. Join us in our mission to transform the power of diagnostics into a healthier future for all.
THE ROLE
As we continue to grow as QuidelOrtho, we are seeking a Distribution & Warehouse Operations Manager. The Distribution & Warehouse Operations Manager leads multi-site warehousing (receiving, put-away, storage, inventory control, picking/packing, shipping), 3PL overflow operations, and outbound transportation from the plants to North American distribution centers, as well as order fulfillment and distribution to one direct-ship customer. The role ensures inventory accuracy, on-time/accurate shipments, carrier performance, safety, and cost efficiency, and partners closely with Materials Management, Production Planning, Manufacturing, Customer Service/Order Management, Quality, EHS, Finance, IT/Systems, 3PLs, and carriers. Systems: SAP.
This position is onsite in Rochester, NY.
Schedule: This is primarily a 1st shift position with oversight of all Rochester warehouses.
THE RESPONSIBILITIES
-
Strategy & Leadership
Own the end-to-end execution from receiving through shipment: three plant warehouses, 3PL overflow, and outbound transportation to NA DCs/direct-ship customer.
Build and lead high-performing teams (including 1 Warehouse Supervisor), set standards of work, staff to plan, and develop cross-training for flexibility.
Establish a tiered management system (daily/weekly/monthly) with visible KPIs and structured problem solving. -
Warehouse Operations (3 Sites)
Oversee receiving, put-away, storage/slotting, kitting/staging, picking, packing, and shipping.
Drive inventory accuracy via robust cycle counting, root cause analysis, and corrective actions.
Optimize layout, slotting, MHE, and racking to improve flow, safety, and productivity.
Ensure dock-to-stock and order cycle time targets are met.
Maintain SOPs, work instructions, 5S, and visual management. -
Distribution, Transportation & Direct-Ship Fulfillment
Own transportation planning, tendering, appointment scheduling, and track-and-trace to NA DCs; manage exceptions proactively.
Lead carrier performance (tender acceptance, OTD, claims, cost/stop), and negotiate rates in partnership with Procurement (as applicable).
Ensure on-time, in-full and compliant shipments to the direct-ship customer, including EDI/ASN timeliness, label/pack compliance, and chargeback prevention.
Manage freight claims and work with carriers and plants on corrective actions. -
Cross-Functional Integration
Partner with Production Planning to align daily/weekly shipping plans, constraints, and recovery plans.
Partner with Materials Management for inbound flow, GR/put-away cadence, and to prevent stockouts/line-downs.
Partner with Customer Service/Order Management on order promising, prioritization, and customer compliance.
Collaborate with Quality on nonconformance handling, holds, and disposition.
Coordinate Finance on budgeting, cost controls, and freight audit & pay.
Work with IT/Systems on master data (bins, HU/packing specs, shipping conditions), EDI, and system enhancements. -
Compliance, Safety & Risk
Ensure OSHA and site safety compliance, strict PPE and MHE practices, and lead incident investigations.
Maintain DOT/FMCSA compliance for carrier operations (where applicable); ensure hazmat procedures are followed if relevant.
Own business continuity and peak/seasonal scaling plans for logistics and warehousing. -
Continuous Improvement & Cost Management
Lead CI initiatives (Lean/Kaizen, 5S, standard work, SMED for changeovers in shipping/receiving).
Improve cost per unit, freight cost per pound/unit, and labor productivity while protecting service and quality.
Build and manage annual operating budgets (labor, MHE, supplies, freight) and capex (racking, MHE, automation).
THE INDIVIDUAL
Required:
- High School Diploma or GED
- 7–10+ years in warehousing/distribution/logistics.
- Demonstrated success with transportation to DC networks and direct-ship customer fulfillment.
- ERP/WMS/TMS proficiency (e.g., SAP IM/WM/EWM, TM, or equivalents); strong data discipline and master data acumen.
- Working knowledge of OSHA, DOT/FMCSA, hazmat (as applicable).
Preferred:
- Bachelor’s degree in
- Multi-site responsibility.
- Demonstrated success with transportation to DC networks and direct-ship customer fulfillment.
- ERP/WMS/TMS proficiency (e.g., SAP IM/WM/EWM, TM, or equivalents); strong data discipline and master data acumen.
- Working knowledge of OSHA, DOT/FMCSA, hazmat (as applicable).
THE KEY WORKING INTERACTIONS
Internal: Production Managers, Production Planners, Buyers and Quality
External: N/A
THE WORK ENVIRONMENT
The work environment characteristics are representative of an office, manufacturing, laboratory, and warehouse environment and include handling of viral and bacterial hazards, potentially hazardous chemicals, as well as infectious or potentially infectious bodily fluids, tissues and samples. Up to 75% of time at desk, standing or sitting extended periods of time. Flexible work hours to meet project deadlines.
THE PHYSICAL DEMANDS
Position requires ability to lift up to 50 lbs. or more at least 35% of the day on a regular basis. Walking, standing, and climbing for long periods of time (up to 50% of the day) are routine to accomplish tasks in this role. Specific vision abilities required by this job include close and distance vision and the ability to adjust focus. Must operate a forklift approximately 15% of the time.
Equal Employment Opportunity
QuidelOrtho believes in Equal Opportunity for all and is committed to ensuring all individuals, including individuals with disabilities, have an opportunity to apply for those positions that they are interested in and qualify for without regard to race, religion, color, national origin, citizenship, sex, sexual orientation, gender identity, age, veteran status, disability, genetic information, or any other protected characteristic. QuidelOrtho is also committed to providing reasonable accommodations to qualified individuals so that an individual can perform their duties. If you are interested in applying for an employment opportunity and require special assistance or an accommodation to apply due to a disability, please contact us at recruiting@quidelortho.com.
See All 7 Warehouse Operations Manager Jobs in New York
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Find JobsWarehouse Operations Manager Jobs by City in New York
Where New York roles are concentrated, by current openings.
Warehouse Operations Manager Job Market in New York
A snapshot from current New York openings, updated as new roles post.
Who's Hiring
- Aramark1

- Diagnostic Hybrids1

- NEBRASKALAND1

- Refresco1

- SPX Flow1

Top Industries Hiring
- Food & Beverage2
- Retail2
- Distribution & Wholesale1
- Manufacturing1
- Medical Devices1
What New York Employers Look For
The qualifications that appear most often in warehouse operations manager jobs across New York.
- Proven experience managing warehouse teams, inventory systems, and distribution workflows in New York facilities
- Proficiency with warehouse management systems such as SAP, Manhattan, or Oracle WMS
- OSHA 10 or OSHA 30 certification covering general industry or construction safety standards
- Strong understanding of DOT regulations governing transportation and freight handling in New York operations
- Bachelor's degree in supply chain management, logistics, business, or a related field preferred
- Experience with KPI reporting, labor planning, and continuous improvement methods such as Lean or Six Sigma
Warehouse Operations Manager Jobs in New York: Frequently Asked Questions
How do you become a warehouse operations manager in New York?
Most warehouse operations managers in New York move up through roles like warehouse associate, team lead, or shift supervisor before stepping into management. New York does not require a state-issued license for this role, but employers strongly prefer candidates who hold an OSHA certification and have hands-on experience with warehouse management software. A degree in supply chain, logistics, or business strengthens applications, particularly with larger employers in the metro area and Hudson Valley distribution corridors.
How much do warehouse operations managers make in New York?
Warehouse operations managers in New York earn a median of about $127,180 a year, based on May 2025 Bureau of Labor Statistics wage data, ranging from around $80,430 for the lowest 10% to over $204,600 for the top 10%. Pay rises with experience, specialty, and employer.
Which companies hire warehouse operations managers in New York?
Employers hiring warehouse operations managers in New York right now include Aramark, Diagnostic Hybrids, and NEBRASKALAND, based on current listings on Migrate Mate as of June 2026. New York's concentration of e-commerce fulfillment centers, food service distributors, and freight companies means openings appear across a broad range of employer sizes and industries throughout the state.
Which New York cities have the most warehouse operations manager jobs?
Rochester, Bronx, and Copiague account for the largest share of warehouse operations manager openings in New York. New York City and its surrounding boroughs drive volume through last-mile delivery and food distribution networks, while cities like Newburgh and Albany sit along major freight corridors that connect regional distribution hubs serving the broader Northeast.
Are there remote warehouse operations manager jobs in New York?
Yes, but they're rare. Warehouse operations management is fundamentally an on-site role requiring direct oversight of facilities, teams, and physical inventory. About 0% of warehouse operations manager openings tied to New York are remote or hybrid as of June 2026, and those positions tend to involve centralized planning, multi-site coordination, or vendor management functions that don't require a daily floor presence.
How can I get hired as a warehouse operations manager in New York with little or no experience?
The most realistic entry path is starting as a warehouse associate or lead at a large New York employer such as Amazon, FedEx, or Sysco, which regularly promote from within into supervisor and manager roles. Gaining an OSHA 10 certification and learning a common warehouse management system like SAP or Oracle significantly improves your candidacy. Lateral moves from roles like inventory analyst, logistics coordinator, or operations associate are also common bridges into management in New York's distribution sector.
Where can I find and apply to warehouse operations manager jobs in New York?
You can find and apply to warehouse operations manager jobs in New York on Migrate Mate, which lists current openings across the state's logistics, fulfillment, and distribution sectors. Search the listings for roles that match your experience level and preferred location, then apply directly to the ones that fit.
See All 7 Warehouse Operations Manager Jobs in New York
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