Clinical Analyst Jobs in Indiana
Clinical Analyst jobs in Indiana are open across Indianapolis, Evansville, and Bloomington and other Indiana metros, with employers like Deaconess Health System, Eli Lilly, and Indiana University Health hiring at every experience level. Find a role that fits below and apply directly.
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Pay Information
Pay Scale: $59,716.80 - $149,219.20
Hybrid or remote position depending on employee location
Join Our Team
We are seeking a detail-oriented and technically skilled Clinical Application Analyst – Beaker to join our Digital Technology Services (DTS) team at Deaconess Health System. In this role, you will support and enhance laboratory operations through the administration, configuration, and optimization of Beaker and other related laboratory applications. You will play a key role in ensuring that technology solutions meet clinical and operational needs, improve efficiency, and advance patient care.
Benefits
We pride ourselves in retaining our top talent by offering work environments that support professional development and personal success. In addition to our robust healthcare and retirement plans, we offer:
- Flexible work schedules – Full-time/part-time/supplemental – Day/Eve/Night
- Onsite children’s care centers (Infant through Pre-K)
- Tuition reimbursement
- Student Loan Repayment Program
- Payactiv – earned wage benefit (work today, get paid tomorrow)
- Free access to Midtown Fitness Center
- Career advancement opportunities
Job Overview
The Clinical Application Analyst – Sunquest will utilize their expertise in Sunquest Laboratory Information Systems (LIS) to perform moderately complex systems administration, configuration, and application build activities. This role is primarily responsible for supporting, maintaining, and optimizing Sunquest and other third-party laboratory systems to ensure reliable and efficient laboratory operations.
What You Will Do
- Configure, build, and maintain Sunquest LIS applications and related systems to support laboratory workflows and ensure data integrity.
- Provide tiered support for production issues, system enhancements, and regular upgrades to Sunquest LIS and related applications.
- Collaborate with laboratory leadership, clinicians, and IT teams to evaluate needs, recommend, and implement solutions to improve quality, efficiency, and patient care outcomes.
- Participate in new system implementations, workflow redesign, and integration projects involving Sunquest LIS or related laboratory systems.
- Monitor and troubleshoot data interfaces and integration points between Sunquest LIS and other third-party laboratory applications.
- Assist with system patching, Windows registry updates, and other routine security activities as required to maintain system integrity.
- Document system changes, workflows, and standard operating procedures for Sunquest LIS.
- Mentor and provide guidance to other DTS team members, particularly in Sunquest LIS-related workflows, configuration, and applications support.
- Maintain compliance with all applicable IT, security, and healthcare regulations.
What You Will Need
Education
- Associate’s Degree in Information Technology, Laboratory Science, or a related field — Required
- Bachelor’s Degree in a related field — Preferred
Experience
- Minimum of 3 years of experience supporting Laboratory Information Systems or clinical applications — Required
- Experience with Sunquest LIS or similar laboratory systems — Preferred
- Strong understanding of clinical laboratory workflows, data integrity, and relevant regulatory requirements.
Keywords
- Sunquest LIS, Laboratory Information Systems, LIS, Clinical Application Analyst, Application Support, Healthcare IT, Laboratory Informatics, Systems Integration, Clinical Informatics, Lab IT.
See All 11 Clinical Analyst Jobs in Indiana
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Find Clinical Analyst JobsClinical Analyst Jobs by City in Indiana
Where Indiana roles are concentrated, by current openings.
Clinical Analyst Job Market in Indiana
A snapshot from current Indiana openings, updated as new roles post.
Who's Hiring
- Deaconess Health System2

- Eli Lilly2

- Indiana University Health2

- Columbus Regional Health1

- Elanco1

Top Industries Hiring
- Healthcare & Medical Services5
- Biotechnology & Pharmaceuticals4
- Education1
- Medical Devices1
What Indiana Employers Look For
The qualifications that appear most often in clinical analyst jobs across Indiana.
- Experience with EHR platforms such as Epic, Cerner, or Meditech
- Bachelor's degree in health informatics, clinical science, or a related field
- Proficiency in SQL, Excel, or clinical data reporting tools
- Knowledge of clinical workflows, care delivery processes, or healthcare operations
- CPHIMS, CPHI, or equivalent health informatics certification preferred
- Experience supporting EHR implementations, upgrades, or go-live activations
Clinical Analyst Jobs in Indiana: Frequently Asked Questions
How many clinical analyst jobs are there in Indiana?
There are 11+ clinical analyst openings in Indiana on Migrate Mate as of June 2026, with the most roles in Indianapolis, Evansville, and Bloomington. New positions post regularly as employers across Indiana hire.
Which Indiana cities have the most clinical analyst jobs?
Indianapolis, Evansville, and Bloomington have the most clinical analyst openings in Indiana right now, with additional roles spread across smaller metros statewide.
Which companies hire clinical analysts in Indiana?
Employers hiring clinical analysts in Indiana include Deaconess Health System, Eli Lilly, and Indiana University Health, based on current listings on Migrate Mate as of June 2026.
Are there remote clinical analyst jobs in Indiana?
Yes. About 36% of clinical analyst openings tied to Indiana are remote or hybrid as of June 2026. The rest are on-site roles based in Indiana metros.
How do I apply for clinical analyst jobs in Indiana?
You can apply to clinical analyst jobs in Indiana directly on Migrate Mate. Search the listings above, find roles that match your experience and preferred Indiana location, then apply to each one that fits.
See All 11 Clinical Analyst Jobs in Indiana
Find roles in Indiana that match your experience and apply in just a few clicks.
Find Clinical Analyst Jobs