Compliance Analyst Jobs in Wisconsin
Compliance Analyst jobs in Wisconsin are open across Milwaukee, Madison, and Oshkosh and other Wisconsin metros, with employers like Amcor, Affirm, and Ryder System hiring at every experience level. Find a role that fits below and apply directly.
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JOB SUMMARY
The Coding and Billing Compliance Analyst plays a critical role in safeguarding the accuracy, integrity, and regulatory compliance of coding and billing operations across all service lines. This position supports the organization’s revenue cycle and compliance initiatives by conducting detailed coding and billing reviews, identifying areas of risk, and contributing to the development of corrective action plans and educational programs. The analyst ensures adherence to federal and state billing regulations, including Medicaid/Medicare guidelines, HRSA program requirements, and Office of Inspector General (OIG) guidance specific to Federally Qualified Health Centers (FQHCs). The Analyst collaborates with providers, billing teams, compliance officers, and revenue cycle leadership, to improve clinical documentation, optimize reimbursement, and maintain full compliance with all applicable standards and payer requirements.
ESSENTIAL JOB FUNCTIONS
- Reviews provider documentation, medical records, and associated charges to ensure correct assignment of ICD-10, CPT, HCPCS codes, and modifiers according to payer, CMS, HRSA, and FQHC-specific guidelines.
- Conducts regular audits of coding, billing, and claims to ensure accuracy, completeness, and compliance with CPT, CDT, HCPCS, ICD-10, and payer-specific guidelines.
- Monitors claims submissions, pre-bill edits, denials, and payor feedback and identify coding and billing errors or trends and recommend corrective actions and coordinate follow-up audits as needed.
- Assists in developing, updating, and maintaining coding and billing compliance policies, procedures, training materials as guidelines or payor rules change.
- Collaborates proactively with providers, clinical teams, and billing staff to ensure accurate documentation, compliant coding practices, and adherence to Medicaid coverage and reimbursement requirements.
- Analyzes denied or underpaid claims to identify root causes, including coding errors, documentation gaps, or payer-specific policy issues, and collaborate with interdepartmental teams to implement targeted process improvements that strengthen billing compliance and optimize revenue integrity.
- Monitors and interprets payer updates, coding changes, and reimbursement policy revisions from CMS, HRSA, Medicaid, and commercial payers; evaluates their impact on FQHC operations and communicates relevant updates, guidance, and action steps to affected departments to ensure compliance and optimized reimbursement.
- Monitors coding practices for compliance with FQHC Prospective Payment System (PPS) and encounter-based billing guidelines.
- Performs charge reviews comparing itemized bills to medical record documents to ensure appropriate charges.
- Conducts regular staff training sessions for providers, billers, and clinical staff on documentation, coding updates, and compliance best practices.
- Prepares audit reports and presents findings to leadership and compliance officer.
- Maintains strict adherence to scheduled work hours with regular and reliable attendance.
- Performs other duties as assigned.
EDUCATION AND EXPERIENCE
Minimum of 3-5 years of experience in medical billing, coding, and/or compliance within a healthcare setting is required; FQHC experience preferred.
Proficiency with EHR and practice management systems (e.g., Epic Systems, NextGen Healthcare, eClinicalWorks).
Associate’s or degree in Health Information Management, Healthcare Administration, or related field preferred.
CERTIFICATIONS / LICENSES
Certified Professional Coder (CPC), awarded by American Academy Professional Coders (AAPC) required.
Additional credentials such as Certified Compliance Professional (CCP) preferred.
Valid Wisconsin Driver’s License required with an acceptable motor vehicle record (MVR), per FHC guidelines.
See All 24 Compliance Analyst Jobs in Wisconsin
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Find Compliance Analyst JobsCompliance Analyst Jobs by City in Wisconsin
Where Wisconsin roles are concentrated, by current openings.
Compliance Analyst Job Market in Wisconsin
A snapshot from current Wisconsin openings, updated as new roles post.
Who's Hiring
- Amcor3

- Affirm2

- Ryder System2

- ABC Supply Co.1

- Artisan Partners Limited Partnership1

Top Industries Hiring
- Healthcare & Medical Services4
- Chemicals & Materials3
- Manufacturing3
- Banking & Financial Services2
- Distribution & Wholesale2
What Wisconsin Employers Look For
The qualifications that appear most often in compliance analyst jobs across Wisconsin.
- Bachelor's degree in finance, business, law, or a related field
- Experience interpreting and applying regulatory requirements such as SOX, HIPAA, or BSA
- Proficiency with compliance management software and GRC platforms
- Relevant certification such as CRCM, CCEP, CAMS, or CFE preferred
- Strong written communication skills for policy documentation and regulatory reporting
- Ability to conduct internal audits, gap analyses, and risk assessments
Compliance Analyst Jobs in Wisconsin: Frequently Asked Questions
How many compliance analyst jobs are there in Wisconsin?
There are 24+ compliance analyst openings in Wisconsin on Migrate Mate as of June 2026, with the most roles in Milwaukee, Madison, and Oshkosh. New positions post regularly as employers across Wisconsin hire.
How much do compliance analysts make in Wisconsin?
Compliance analysts in Wisconsin earn a median of about $86,320 a year, based on May 2025 Bureau of Labor Statistics wage data, ranging from around $64,490 for the lowest 10% to over $149,120 for the top 10%. Pay rises with experience, specialty, and employer.
Which Wisconsin cities have the most compliance analyst jobs?
Milwaukee, Madison, and Oshkosh have the most compliance analyst openings in Wisconsin right now, with additional roles spread across smaller metros statewide.
Which companies hire compliance analysts in Wisconsin?
Employers hiring compliance analysts in Wisconsin include Amcor, Affirm, and Ryder System, based on current listings on Migrate Mate as of June 2026.
Are there remote compliance analyst jobs in Wisconsin?
Yes. About 42% of compliance analyst openings tied to Wisconsin are remote or hybrid as of June 2026. The rest are on-site roles based in Wisconsin metros.
How do I apply for compliance analyst jobs in Wisconsin?
You can apply to compliance analyst jobs in Wisconsin directly on Migrate Mate. Search the listings above, find roles that match your experience and preferred Wisconsin location, then apply to each one that fits.
See All 24 Compliance Analyst Jobs in Wisconsin
Find roles in Wisconsin that match your experience and apply in just a few clicks.
Find Compliance Analyst Jobs